* [gentoo-commits] proj/sci:master commit in: sci-biology/bwa/
@ 2015-02-08 21:07 Christoph Junghans
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From: Christoph Junghans @ 2015-02-08 21:07 UTC (permalink / raw
To: gentoo-commits
commit: 0e022df74f7743c179892b2d68d693ac4031c880
Author: Ted Tanberry <ted.tanberry <AT> gmail <DOT> com>
AuthorDate: Fri Feb 6 08:59:48 2015 +0000
Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Fri Feb 6 08:59:48 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0e022df7
Amended bwa ebuild to remove base.eclass
---
sci-biology/bwa/bwa-0.7.12.ebuild | 19 +++++++++++--------
1 file changed, 11 insertions(+), 8 deletions(-)
diff --git a/sci-biology/bwa/bwa-0.7.12.ebuild b/sci-biology/bwa/bwa-0.7.12.ebuild
index 353c4bf..62488f3 100644
--- a/sci-biology/bwa/bwa-0.7.12.ebuild
+++ b/sci-biology/bwa/bwa-0.7.12.ebuild
@@ -4,7 +4,7 @@
EAPI=5
-inherit base toolchain-funcs
+inherit eutils toolchain-funcs
DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
HOMEPAGE="http://bio-bwa.sourceforge.net/"
@@ -17,15 +17,18 @@ KEYWORDS="~amd64 ~x86 ~x64-macos"
PATCHES=( "${FILESDIR}"/${PN}_Makefile.patch )
-src_compile() {
+src_prepare() {
+ epatch ${PATCHES[@]}
tc-export CC AR
- default
}
src_install() {
- dobin bwa || die
- doman bwa.1 || die
- exeinto /usr/share/${PN}
- doexe qualfa2fq.pl xa2multi.pl || die
- dodoc NEWS.md README-alt.md README.md || die
+ dobin bwa
+
+ doman bwa.1
+
+ exeinto /usr/libexec/${PN}
+ doexe qualfa2fq.pl xa2multi.pl
+
+ dodoc NEWS.md README-alt.md README.md
}
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2015-02-08 21:07 [gentoo-commits] proj/sci:master commit in: sci-biology/bwa/ Christoph Junghans
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