From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 8BF0F138A1A for ; Mon, 2 Feb 2015 20:53:39 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 4A881E08CE; Mon, 2 Feb 2015 20:53:37 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id CE779E08CE for ; Mon, 2 Feb 2015 20:53:36 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 3829034066C for ; Mon, 2 Feb 2015 20:53:35 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 8677B10EB0 for ; Mon, 2 Feb 2015 20:53:33 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1422910289.f7197b7ce3f627083bdac70048b0711968472b49.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/tagdust/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/tagdust/ChangeLog sci-biology/tagdust/metadata.xml sci-biology/tagdust/tagdust-20101028.ebuild X-VCS-Directories: sci-biology/tagdust/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: f7197b7ce3f627083bdac70048b0711968472b49 X-VCS-Branch: master Date: Mon, 2 Feb 2015 20:53:33 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 6d013c3c-a2bb-4da5-9e35-49e9de35955d X-Archives-Hash: 4a6ee74f961f9abc6caeafbdbc857891 commit: f7197b7ce3f627083bdac70048b0711968472b49 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Mon Feb 2 20:51:29 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Mon Feb 2 20:51:29 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f7197b7c sci-biology/tagdust: new package Package-Manager: portage-2.2.15 --- sci-biology/tagdust/ChangeLog | 9 ++++++++ sci-biology/tagdust/metadata.xml | 9 ++++++++ sci-biology/tagdust/tagdust-20101028.ebuild | 33 +++++++++++++++++++++++++++++ 3 files changed, 51 insertions(+) diff --git a/sci-biology/tagdust/ChangeLog b/sci-biology/tagdust/ChangeLog new file mode 100644 index 0000000..8d2d813 --- /dev/null +++ b/sci-biology/tagdust/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/tagdust +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*tagdust-20101028 (02 Feb 2015) + + 02 Feb 2015; Martin Mokrejs +metadata.xml, + +tagdust-20101028.ebuild: + sci-biology/tagdust: new package diff --git a/sci-biology/tagdust/metadata.xml b/sci-biology/tagdust/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/tagdust/metadata.xml @@ -0,0 +1,9 @@ + + + + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + + diff --git a/sci-biology/tagdust/tagdust-20101028.ebuild b/sci-biology/tagdust/tagdust-20101028.ebuild new file mode 100644 index 0000000..b9e0862 --- /dev/null +++ b/sci-biology/tagdust/tagdust-20101028.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +DESCRIPTION="Trim multimers of various primers/adapter from Illumina datasets" +HOMEPAGE="http://genome.gsc.riken.jp/osc/english/dataresource" +SRC_URI="http://genome.gsc.riken.jp/osc/english/software/src/tagdust.tgz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/tagdust + +src_prepare(){ + sed -e "s/^CFLAGS/#CFLAGS/" -e "s#/usr/local/bin#\$(DESTDIR)/usr/bin#" \ + -e "s#/usr/share/man/#\$(DESTDIR)/usr/share/man/#" -i Makefile +} + +src_install(){ + doman tagdust.1 + dobin tagdust + insinto /usr/share/tagdust/Illumina + doins "test/"solexa*.fa + insinto /usr/share/tagdust + doins "test/"protocol.txt README +}