[gentoo-commits] proj/sci:master commit in: sci-biology/epga/

[gentoo-commits] proj/sci:master commit in: sci-biology/epga/

[Martin Mokrejs]

commit:     ac04739d49d0354f0daba854886317a455b798ae
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Jan 15 13:24:36 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Jan 15 13:24:36 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ac04739d

sci-biology/epga: new package; no LICENSE file

---
 sci-biology/epga/ChangeLog        | 10 ++++++++++
 sci-biology/epga/epga-9999.ebuild | 36 ++++++++++++++++++++++++++++++++++++
 sci-biology/epga/metadata.xml     |  9 +++++++++
 3 files changed, 55 insertions(+)

diff --git a/sci-biology/epga/ChangeLog b/sci-biology/epga/ChangeLog
new file mode 100644
index 0000000..5d20948
--- /dev/null
+++ b/sci-biology/epga/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/epga
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*epga-9999 (15 Jan 2015)
+
+  15 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +epga-9999.ebuild,
+  +metadata.xml:
+  new package; no LICENSE file
+

diff --git a/sci-biology/epga/epga-9999.ebuild b/sci-biology/epga/epga-9999.ebuild
new file mode 100644
index 0000000..63a50e6
--- /dev/null
+++ b/sci-biology/epga/epga-9999.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+[ "$PV" == "9999" ] && inherit git-2
+
+inherit toolchain-funcs
+
+DESCRIPTION="De novo assembler using distribution of reads and insert size"
+HOMEPAGE="https://github.com/bioinfomaticsCSU/EPGA"
+if [ "$PV" == "9999" ]; then
+	EGIT_REPO_URI="https://github.com/bioinfomaticsCSU/EPGA.git"
+	KEYWORDS=""
+else
+	SRC_URI=""
+	KEYWORDS=""
+fi
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+src_compile(){
+	$(tc-getCXX) ${CFLAGS} main.cpp -o epga -lpthread
+}
+
+src_install(){
+	dobin epga
+	dodoc README.md
+}

diff --git a/sci-biology/epga/metadata.xml b/sci-biology/epga/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/epga/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/epga/

[Christoph Junghans]

commit:     3d9fc0c1f746a6eb71159b39988a8fd09d4db0c7
Author:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Thu Jan 15 16:28:25 2015 +0000
Commit:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Thu Jan 15 16:28:25 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3d9fc0c1

Revert "sci-biology/epga: new package; no LICENSE file"

Missing license

This reverts commit ac04739d49d0354f0daba854886317a455b798ae.

---
 sci-biology/epga/ChangeLog        | 10 ----------
 sci-biology/epga/epga-9999.ebuild | 36 ------------------------------------
 sci-biology/epga/metadata.xml     |  9 ---------
 3 files changed, 55 deletions(-)

diff --git a/sci-biology/epga/ChangeLog b/sci-biology/epga/ChangeLog
deleted file mode 100644
index 5d20948..0000000
--- a/sci-biology/epga/ChangeLog
+++ /dev/null
@@ -1,10 +0,0 @@
-# ChangeLog for sci-biology/epga
-# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*epga-9999 (15 Jan 2015)
-
-  15 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +epga-9999.ebuild,
-  +metadata.xml:
-  new package; no LICENSE file
-

diff --git a/sci-biology/epga/epga-9999.ebuild b/sci-biology/epga/epga-9999.ebuild
deleted file mode 100644
index 63a50e6..0000000
--- a/sci-biology/epga/epga-9999.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=5
-
-[ "$PV" == "9999" ] && inherit git-2
-
-inherit toolchain-funcs
-
-DESCRIPTION="De novo assembler using distribution of reads and insert size"
-HOMEPAGE="https://github.com/bioinfomaticsCSU/EPGA"
-if [ "$PV" == "9999" ]; then
-	EGIT_REPO_URI="https://github.com/bioinfomaticsCSU/EPGA.git"
-	KEYWORDS=""
-else
-	SRC_URI=""
-	KEYWORDS=""
-fi
-
-LICENSE=""
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND=""
-RDEPEND="${DEPEND}"
-
-src_compile(){
-	$(tc-getCXX) ${CFLAGS} main.cpp -o epga -lpthread
-}
-
-src_install(){
-	dobin epga
-	dodoc README.md
-}

diff --git a/sci-biology/epga/metadata.xml b/sci-biology/epga/metadata.xml
deleted file mode 100644
index 2bc8930..0000000
--- a/sci-biology/epga/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <herd>sci-biology</herd>
-  <maintainer>
-    <email>mmokrejs@fold.natur.cuni.cz</email>
-    <name>Martin Mokrejs</name>
-  </maintainer>
-</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/epga/

[Christoph Junghans]

commit:     eab6fe1bbba47daf79269434cd3eab247a539592
Author:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Sun Jan 18 02:16:33 2015 +0000
Commit:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Sun Jan 18 02:16:33 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=eab6fe1b

Revert "Revert "sci-biology/epga: new package; no LICENSE file""

This reverts commit 3d9fc0c1f746a6eb71159b39988a8fd09d4db0c7.

---
 sci-biology/epga/ChangeLog        | 10 ++++++++++
 sci-biology/epga/epga-9999.ebuild | 36 ++++++++++++++++++++++++++++++++++++
 sci-biology/epga/metadata.xml     |  9 +++++++++
 3 files changed, 55 insertions(+)

diff --git a/sci-biology/epga/ChangeLog b/sci-biology/epga/ChangeLog
new file mode 100644
index 0000000..5d20948
--- /dev/null
+++ b/sci-biology/epga/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/epga
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*epga-9999 (15 Jan 2015)
+
+  15 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +epga-9999.ebuild,
+  +metadata.xml:
+  new package; no LICENSE file
+

diff --git a/sci-biology/epga/epga-9999.ebuild b/sci-biology/epga/epga-9999.ebuild
new file mode 100644
index 0000000..63a50e6
--- /dev/null
+++ b/sci-biology/epga/epga-9999.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+[ "$PV" == "9999" ] && inherit git-2
+
+inherit toolchain-funcs
+
+DESCRIPTION="De novo assembler using distribution of reads and insert size"
+HOMEPAGE="https://github.com/bioinfomaticsCSU/EPGA"
+if [ "$PV" == "9999" ]; then
+	EGIT_REPO_URI="https://github.com/bioinfomaticsCSU/EPGA.git"
+	KEYWORDS=""
+else
+	SRC_URI=""
+	KEYWORDS=""
+fi
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+src_compile(){
+	$(tc-getCXX) ${CFLAGS} main.cpp -o epga -lpthread
+}
+
+src_install(){
+	dobin epga
+	dodoc README.md
+}

diff --git a/sci-biology/epga/metadata.xml b/sci-biology/epga/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/epga/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/epga/

[Christoph Junghans]

commit:     5585cc817cad18636e690b2add33e85e2760fb16
Author:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Sun Jan 18 02:17:35 2015 +0000
Commit:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Sun Jan 18 02:17:35 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5585cc81

license defined

Package-Manager: portage-2.2.14

---
 sci-biology/epga/ChangeLog        | 4 +++-
 sci-biology/epga/epga-9999.ebuild | 2 +-
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/sci-biology/epga/ChangeLog b/sci-biology/epga/ChangeLog
index 5d20948..25e2f81 100644
--- a/sci-biology/epga/ChangeLog
+++ b/sci-biology/epga/ChangeLog
@@ -2,9 +2,11 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  18 Jan 2015; Christoph Junghans <ottxor@gentoo.org> epga-9999.ebuild:
+  license defined
+
 *epga-9999 (15 Jan 2015)
 
   15 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +epga-9999.ebuild,
   +metadata.xml:
   new package; no LICENSE file
-

diff --git a/sci-biology/epga/epga-9999.ebuild b/sci-biology/epga/epga-9999.ebuild
index 63a50e6..fec22ab 100644
--- a/sci-biology/epga/epga-9999.ebuild
+++ b/sci-biology/epga/epga-9999.ebuild
@@ -18,7 +18,7 @@ else
 	KEYWORDS=""
 fi
 
-LICENSE=""
+LICENSE="GPL-3+"
 SLOT="0"
 KEYWORDS=""
 IUSE=""

[gentoo-commits] proj/sci:master commit in: sci-biology/epga/

[Justin Lecher]

commit:     347c8bfcd09b818a4678cf9a135f7977c9fbaee3
Author:     Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
AuthorDate: Mon Feb  9 08:59:01 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Feb  9 09:08:53 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=347c8bfc

sci-biology/epga-9999: Switch from git-2 to git-r3; Cleanup

---
 sci-biology/epga/ChangeLog        | 3 +++
 sci-biology/epga/epga-9999.ebuild | 4 +---
 2 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/sci-biology/epga/ChangeLog b/sci-biology/epga/ChangeLog
index 25e2f81..1e947a0 100644
--- a/sci-biology/epga/ChangeLog
+++ b/sci-biology/epga/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  09 Feb 2015; Marius Brehler <marbre@linux.sungazer.de> epga-9999.ebuild:
+  Switch from git-2 to git-r3; Cleanup
+
   18 Jan 2015; Christoph Junghans <ottxor@gentoo.org> epga-9999.ebuild:
   license defined
 

diff --git a/sci-biology/epga/epga-9999.ebuild b/sci-biology/epga/epga-9999.ebuild
index fec22ab..575538f 100644
--- a/sci-biology/epga/epga-9999.ebuild
+++ b/sci-biology/epga/epga-9999.ebuild
@@ -4,7 +4,7 @@
 
 EAPI=5
 
-[ "$PV" == "9999" ] && inherit git-2
+[ "$PV" == "9999" ] && inherit git-r3
 
 inherit toolchain-funcs
 
@@ -20,8 +20,6 @@ fi
 
 LICENSE="GPL-3+"
 SLOT="0"
-KEYWORDS=""
-IUSE=""
 
 DEPEND=""
 RDEPEND="${DEPEND}"

[gentoo-commits] proj/sci:master commit in: sci-biology/epga/

[Andrew Ammerlaan]

commit:     439d3be22d90de3baed65d2f132a9f4e8799a9b7
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar  6 10:53:15 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar  6 10:53:15 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=439d3be2

sci-biology/epga: EAPI bump

Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/epga/epga-9999.ebuild | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/sci-biology/epga/epga-9999.ebuild b/sci-biology/epga/epga-9999.ebuild
index 53d39a8ee..0889158a1 100644
--- a/sci-biology/epga/epga-9999.ebuild
+++ b/sci-biology/epga/epga-9999.ebuild
@@ -1,15 +1,14 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
-
-[ "$PV" == "9999" ] && inherit git-r3
+EAPI=7
 
 inherit toolchain-funcs
 
 DESCRIPTION="De novo assembler using distribution of reads and insert size"
 HOMEPAGE="https://github.com/bioinfomaticsCSU/EPGA"
 if [ "$PV" == "9999" ]; then
+	 inherit git-r3
 	EGIT_REPO_URI="https://github.com/bioinfomaticsCSU/EPGA.git"
 	KEYWORDS=""
 else

[gentoo-commits] proj/sci:master commit in: sci-biology/epga/

[Andrew Ammerlaan]

commit:     b73fe3766998b3d1d9ce7fe24479a65c7d82ab1d
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Mar 20 10:58:53 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Mar 20 10:58:53 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b73fe376

sci-biology/epga: fix MultipleKeywordsLines

Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/epga/epga-9999.ebuild | 1 -
 1 file changed, 1 deletion(-)

diff --git a/sci-biology/epga/epga-9999.ebuild b/sci-biology/epga/epga-9999.ebuild
index 0889158a1..55b94d351 100644
--- a/sci-biology/epga/epga-9999.ebuild
+++ b/sci-biology/epga/epga-9999.ebuild
@@ -10,7 +10,6 @@ HOMEPAGE="https://github.com/bioinfomaticsCSU/EPGA"
 if [ "$PV" == "9999" ]; then
 	 inherit git-r3
 	EGIT_REPO_URI="https://github.com/bioinfomaticsCSU/EPGA.git"
-	KEYWORDS=""
 else
 	SRC_URI=""
 	KEYWORDS=""