public inbox for gentoo-commits@lists.gentoo.org
 help / color / mirror / Atom feed
* [gentoo-commits] proj/sci:master commit in: sci-biology/InterMine/, licenses/
@ 2015-01-10 14:57 Justin Lecher
  0 siblings, 0 replies; 2+ messages in thread
From: Justin Lecher @ 2015-01-10 14:57 UTC (permalink / raw
  To: gentoo-commits

commit:     769198ad7f23e85476a3accdc9532ffe103f1049
Author:     Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
AuthorDate: Sat Jan 10 14:54:46 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jan 10 14:54:46 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=769198ad

Fix InterMine ebuil: Replace InterMine license by LGPL-2.1+

---
 licenses/InterMine                          | 452 ----------------------------
 sci-biology/InterMine/ChangeLog             |   4 +
 sci-biology/InterMine/InterMine-0.98.ebuild |   2 +-
 3 files changed, 5 insertions(+), 453 deletions(-)

diff --git a/licenses/InterMine b/licenses/InterMine
deleted file mode 100644
index 811386b..0000000
--- a/licenses/InterMine
+++ /dev/null
@@ -1,452 +0,0 @@
-InterMine is an open source project distributed under the GNU Lesser
-General Public Licence.
-
-This library is free software; you can redistribute it and/or
-modify it under the terms of the GNU Lesser General Public
-License as published by the Free Software Foundation; either
-version 2.1 of the License, or (at your option) any later version.
-
-This library is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-Lesser General Public License for more details.
-
-
-The following comment should appear in all source code files:
-
-/* 
- * Copyright (C) 2002-2015 FlyMine
- * 
- * This code may be freely distributed and modified under the
- * terms of the GNU Lesser General Public Licence.  This should
- * be distributed with the code.  See the LICENSE file for more 
- * information or http://www.gnu.org/copyleft/lesser.html.
- * 
- */
-
-
-InterMine
-Department of Genetics
-Downing Street
-Cambridge, CB2 3EH, UK
-
-www.intermine.org
-info@flymine.org
-
-
-
-The LGPL is defined as follows:
-
-
-GNU LESSER GENERAL PUBLIC LICENSE
-Version 2.1, February 1999 
-
-
-Copyright (C) 1991, 1999 Free Software Foundation, Inc.
-59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
-Everyone is permitted to copy and distribute verbatim copies
-of this license document, but changing it is not allowed.
-
-[This is the first released version of the Lesser GPL.  It also counts
- as the successor of the GNU Library Public License, version 2, hence
- the version number 2.1.]
-
-Preamble
-
-The licenses for most software are designed to take away your freedom to share
-and change it. By contrast, the GNU General Public Licenses are intended to
-guarantee your freedom to share and change free software--to make sure the
-software is free for all its users. 
-
-This license, the Lesser General Public License, applies to some specially
-designated software packages--typically libraries--of the Free Software
-Foundation and other authors who decide to use it. You can use it too, but we
-suggest you first think carefully about whether this license or the ordinary
-General Public License is the better strategy to use in any particular case,
-based on the explanations below. 
-
-When we speak of free software, we are referring to freedom of use, not price.
-Our General Public Licenses are designed to make sure that you have the freedom
-to distribute copies of free software (and charge for this service if you wish);
-that you receive source code or can get it if you want it; that you can change
-the software and use pieces of it in new free programs; and that you are
-informed that you can do these things. 
-
-To protect your rights, we need to make restrictions that forbid distributors to
-deny you these rights or to ask you to surrender these rights. These
-restrictions translate to certain responsibilities for you if you distribute
-copies of the library or if you modify it. 
-
-For example, if you distribute copies of the library, whether gratis or for a
-fee, you must give the recipients all the rights that we gave you. You must make
-sure that they, too, receive or can get the source code. If you link other code
-with the library, you must provide complete object files to the recipients, so
-that they can relink them with the library after making changes to the library
-and recompiling it. And you must show them these terms so they know their
-rights. 
-
-We protect your rights with a two-step method: (1) we copyright the library, and
-(2) we offer you this license, which gives you legal permission to copy,
-distribute and/or modify the library. 
-
-To protect each distributor, we want to make it very clear that there is no
-warranty for the free library. Also, if the library is modified by someone else
-and passed on, the recipients should know that what they have is not the
-original version, so that the original author's reputation will not be affected
-by problems that might be introduced by others. 
-
-Finally, software patents pose a constant threat to the existence of any free
-program. We wish to make sure that a company cannot effectively restrict the
-users of a free program by obtaining a restrictive license from a patent holder.
-Therefore, we insist that any patent license obtained for a version of the
-library must be consistent with the full freedom of use specified in this
-license. 
-
-Most GNU software, including some libraries, is covered by the ordinary GNU
-General Public License. This license, the GNU Lesser General Public License,
-applies to certain designated libraries, and is quite different from the
-ordinary General Public License. We use this license for certain libraries in
-order to permit linking those libraries into non-free programs. 
-
-When a program is linked with a library, whether statically or using a shared
-library, the combination of the two is legally speaking a combined work, a
-derivative of the original library. The ordinary General Public License
-therefore permits such linking only if the entire combination fits its criteria
-of freedom. The Lesser General Public License permits more lax criteria for
-linking other code with the library. 
-
-We call this license the "Lesser" General Public License because it does Less to
-protect the user's freedom than the ordinary General Public License. It also
-provides other free software developers Less of an advantage over competing
-non-free programs. These disadvantages are the reason we use the ordinary
-General Public License for many libraries. However, the Lesser license provides
-advantages in certain special circumstances. 
-
-For example, on rare occasions, there may be a special need to encourage the
-widest possible use of a certain library, so that it becomes a de-facto
-standard. To achieve this, non-free programs must be allowed to use the library.
-A more frequent case is that a free library does the same job as widely used
-non-free libraries. In this case, there is little to gain by limiting the free
-library to free software only, so we use the Lesser General Public License. 
-
-In other cases, permission to use a particular library in non-free programs
-enables a greater number of people to use a large body of free software. For
-example, permission to use the GNU C Library in non-free programs enables many
-more people to use the whole GNU operating system, as well as its variant, the
-GNU/Linux operating system. 
-
-Although the Lesser General Public License is Less protective of the users'
-freedom, it does ensure that the user of a program that is linked with the
-Library has the freedom and the wherewithal to run that program using a modified
-version of the Library. 
-
-The precise terms and conditions for copying, distribution and modification
-follow. Pay close attention to the difference between a "work based on the
-library" and a "work that uses the library". The former contains code derived
-from the library, whereas the latter must be combined with the library in order
-to run. 
-
-
-TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
-0. This License Agreement applies to any software library or other program which
-contains a notice placed by the copyright holder or other authorized party
-saying it may be distributed under the terms of this Lesser General Public
-License (also called "this License"). Each licensee is addressed as "you". 
-
-A "library" means a collection of software functions and/or data prepared so as
-to be conveniently linked with application programs (which use some of those
-functions and data) to form executables. 
-
-The "Library", below, refers to any such software library or work which has been
-distributed under these terms. A "work based on the Library" means either the
-Library or any derivative work under copyright law: that is to say, a work
-containing the Library or a portion of it, either verbatim or with modifications
-and/or translated straightforwardly into another language. (Hereinafter,
-translation is included without limitation in the term "modification".) 
-
-"Source code" for a work means the preferred form of the work for making
-modifications to it. For a library, complete source code means all the source
-code for all modules it contains, plus any associated interface definition
-files, plus the scripts used to control compilation and installation of the
-library. 
-
-Activities other than copying, distribution and modification are not covered by
-this License; they are outside its scope. The act of running a program using the
-Library is not restricted, and output from such a program is covered only if its
-contents constitute a work based on the Library (independent of the use of the
-Library in a tool for writing it). Whether that is true depends on what the
-Library does and what the program that uses the Library does. 
-
-1. You may copy and distribute verbatim copies of the Library's complete source
-code as you receive it, in any medium, provided that you conspicuously and
-appropriately publish on each copy an appropriate copyright notice and
-disclaimer of warranty; keep intact all the notices that refer to this License
-and to the absence of any warranty; and distribute a copy of this License along
-with the Library. 
-
-You may charge a fee for the physical act of transferring a copy, and you may at
-your option offer warranty protection in exchange for a fee. 
-
-2. You may modify your copy or copies of the Library or any portion of it, thus
-forming a work based on the Library, and copy and distribute such modifications
-or work under the terms of Section 1 above, provided that you also meet all of
-these conditions: 
-
-
-a) The modified work must itself be a software library. 
-b) You must cause the files modified to carry prominent notices stating that you
-changed the files and the date of any change. 
-c) You must cause the whole of the work to be licensed at no charge to all third
-parties under the terms of this License. 
-d) If a facility in the modified Library refers to a function or a table of data
-to be supplied by an application program that uses the facility, other than as
-an argument passed when the facility is invoked, then you must make a good faith
-effort to ensure that, in the event an application does not supply such function
-or table, the facility still operates, and performs whatever part of its
-purpose remains meaningful. 
-(For example, a function in a library to compute square roots has a purpose that
-is entirely well-defined independent of the application. Therefore, Subsection
-2d requires that any application-supplied function or table used by this
-function must be optional: if the application does not supply it, the square
-root function must still compute square roots.) 
-
-These requirements apply to the modified work as a whole. If identifiable
-sections of that work are not derived from the Library, and can be reasonably
-considered independent and separate works in themselves, then this License, and
-its terms, do not apply to those sections when you distribute them as separate
-works. But when you distribute the same sections as part of a whole which is a
-work based on the Library, the distribution of the whole must be on the terms of
-this License, whose permissions for other licensees extend to the entire whole,
-and thus to each and every part regardless of who wrote it. 
-
-Thus, it is not the intent of this section to claim rights or contest your
-rights to work written entirely by you; rather, the intent is to exercise the
-right to control the distribution of derivative or collective works based on the
-Library. 
-
-In addition, mere aggregation of another work not based on the Library with the
-Library (or with a work based on the Library) on a volume of a storage or
-distribution medium does not bring the other work under the scope of this
-License. 
-
-3. You may opt to apply the terms of the ordinary GNU General Public License
-instead of this License to a given copy of the Library. To do this, you must
-alter all the notices that refer to this License, so that they refer to the
-ordinary GNU General Public License, version 2, instead of to this License. (If
-a newer version than version 2 of the ordinary GNU General Public License has
-appeared, then you can specify that version instead if you wish.) Do not make
-any other change in these notices. 
-
-Once this change is made in a given copy, it is irreversible for that copy, so
-the ordinary GNU General Public License applies to all subsequent copies and
-derivative works made from that copy. 
-
-This option is useful when you wish to copy part of the code of the Library into
-a program that is not a library. 
-
-4. You may copy and distribute the Library (or a portion or derivative of it,
-under Section 2) in object code or executable form under the terms of Sections 1
-and 2 above provided that you accompany it with the complete corresponding
-machine-readable source code, which must be distributed under the terms of
-Sections 1 and 2 above on a medium customarily used for software interchange. 
-
-If distribution of object code is made by offering access to copy from a
-designated place, then offering equivalent access to copy the source code from
-the same place satisfies the requirement to distribute the source code, even
-though third parties are not compelled to copy the source along with the object
-code. 
-
-5. A program that contains no derivative of any portion of the Library, but is
-designed to work with the Library by being compiled or linked with it, is called
-a "work that uses the Library". Such a work, in isolation, is not a derivative
-work of the Library, and therefore falls outside the scope of this License. 
-
-However, linking a "work that uses the Library" with the Library creates an
-executable that is a derivative of the Library (because it contains portions of
-the Library), rather than a "work that uses the library". The executable is
-therefore covered by this License. Section 6 states terms for distribution of
-such executables. 
-
-When a "work that uses the Library" uses material from a header file that is
-part of the Library, the object code for the work may be a derivative work of
-the Library even though the source code is not. Whether this is true is
-especially significant if the work can be linked without the Library, or if the
-work is itself a library. The threshold for this to be true is not precisely
-defined by law. 
-
-If such an object file uses only numerical parameters, data structure layouts
-and accessors, and small macros and small inline functions (ten lines or less in
-length), then the use of the object file is unrestricted, regardless of whether
-it is legally a derivative work. (Executables containing this object code plus
-portions of the Library will still fall under Section 6.) 
-
-Otherwise, if the work is a derivative of the Library, you may distribute the
-object code for the work under the terms of Section 6. Any executables
-containing that work also fall under Section 6, whether or not they are linked
-directly with the Library itself. 
-
-6. As an exception to the Sections above, you may also combine or link a "work
-that uses the Library" with the Library to produce a work containing portions of
-the Library, and distribute that work under terms of your choice, provided that
-the terms permit modification of the work for the customer's own use and reverse
-engineering for debugging such modifications. 
-
-You must give prominent notice with each copy of the work that the Library is
-used in it and that the Library and its use are covered by this License. You
-must supply a copy of this License. If the work during execution displays
-copyright notices, you must include the copyright notice for the Library among
-them, as well as a reference directing the user to the copy of this License.
-Also, you must do one of these things: 
-
-
-a) Accompany the work with the complete corresponding machine-readable source
-code for the Library including whatever changes were used in the work (which
-must be distributed under Sections 1 and 2 above); and, if the work is an
-executable linked with the Library, with the complete machine-readable "work
-that uses the Library", as object code and/or source code, so that the user can
-modify the Library and then relink to produce a modified executable containing
-the modified Library. (It is understood that the user who changes the contents
-of definitions files in the Library will not necessarily be able to recompile
-the application to use the modified definitions.) 
-b) Use a suitable shared library mechanism for linking with the Library. A
-suitable mechanism is one that (1) uses at run time a copy of the library
-already present on the user's computer system, rather than copying library
-functions into the executable, and (2) will operate properly with a modified
-version of the library, if the user installs one, as long as the modified
-version is interface-compatible with the version that the work was made with. 
-c) Accompany the work with a written offer, valid for at least three years, to
-give the same user the materials specified in Subsection 6a, above, for a charge
-no more than the cost of performing this distribution. 
-d) If distribution of the work is made by offering access to copy from a
-designated place, offer equivalent access to copy the above specified materials
-from the same place. 
-e) Verify that the user has already received a copy of these materials or that
-you have already sent this user a copy. 
-For an executable, the required form of the "work that uses the Library" must
-include any data and utility programs needed for reproducing the executable from
-it. However, as a special exception, the materials to be distributed need not
-include anything that is normally distributed (in either source or binary form)
-with the major components (compiler, kernel, and so on) of the operating system
-on which the executable runs, unless that component itself accompanies the
-executable. 
-
-It may happen that this requirement contradicts the license restrictions of
-other proprietary libraries that do not normally accompany the operating system.
-Such a contradiction means you cannot use both them and the Library together in
-an executable that you distribute. 
-
-7. You may place library facilities that are a work based on the Library
-side-by-side in a single library together with other library facilities not
-covered by this License, and distribute such a combined library, provided that
-the separate distribution of the work based on the Library and of the other
-library facilities is otherwise permitted, and provided that you do these two
-things: 
-
-
-a) Accompany the combined library with a copy of the same work based on the
-Library, uncombined with any other library facilities. This must be distributed
-under the terms of the Sections above. 
-b) Give prominent notice with the combined library of the fact that part of it
-is a work based on the Library, and explaining where to find the accompanying
-uncombined form of the same work. 
-8. You may not copy, modify, sublicense, link with, or distribute the Library
-except as expressly provided under this License. Any attempt otherwise to copy,
-modify, sublicense, link with, or distribute the Library is void, and will
-automatically terminate your rights under this License. However, parties who
-have received copies, or rights, from you under this License will not have their
-licenses terminated so long as such parties remain in full compliance. 
-
-9. You are not required to accept this License, since you have not signed it.
-However, nothing else grants you permission to modify or distribute the Library
-or its derivative works. These actions are prohibited by law if you do not
-accept this License. Therefore, by modifying or distributing the Library (or any
-work based on the Library), you indicate your acceptance of this License to do
-so, and all its terms and conditions for copying, distributing or modifying the
-Library or works based on it. 
-
-10. Each time you redistribute the Library (or any work based on the Library),
-the recipient automatically receives a license from the original licensor to
-copy, distribute, link with or modify the Library subject to these terms and
-conditions. You may not impose any further restrictions on the recipients'
-exercise of the rights granted herein. You are not responsible for enforcing
-compliance by third parties with this License. 
-
-11. If, as a consequence of a court judgment or allegation of patent
-infringement or for any other reason (not limited to patent issues), conditions
-are imposed on you (whether by court order, agreement or otherwise) that
-contradict the conditions of this License, they do not excuse you from the
-conditions of this License. If you cannot distribute so as to satisfy
-simultaneously your obligations under this License and any other pertinent
-obligations, then as a consequence you may not distribute the Library at all.
-For example, if a patent license would not permit royalty-free redistribution
-of the Library by all those who receive copies directly or indirectly through
-you, then the only way you could satisfy both it and this License would be to
-refrain entirely from distribution of the Library. 
-
-If any portion of this section is held invalid or unenforceable under any
-particular circumstance, the balance of the section is intended to apply, and
-the section as a whole is intended to apply in other circumstances. 
-
-It is not the purpose of this section to induce you to infringe any patents or
-other property right claims or to contest validity of any such claims; this
-section has the sole purpose of protecting the integrity of the free software
-distribution system which is implemented by public license practices. Many
-people have made generous contributions to the wide range of software
-distributed through that system in reliance on consistent application of that
-system; it is up to the author/donor to decide if he or she is willing to
-distribute software through any other system and a licensee cannot impose that
-choice. 
-
-This section is intended to make thoroughly clear what is believed to be a
-consequence of the rest of this License. 
-
-12. If the distribution and/or use of the Library is restricted in certain
-countries either by patents or by copyrighted interfaces, the original copyright
-holder who places the Library under this License may add an explicit 
-geographical distribution limitation excluding those countries, so that
-distribution is permitted only in or among countries not thus excluded. In such
-case, this License incorporates the limitation as if written in the body of this
-License. 
-
-13. The Free Software Foundation may publish revised and/or new versions of the
-Lesser General Public License from time to time. Such new versions will be
-similar in spirit to the present version, but may differ in detail to address
-new problems or concerns. 
-
-Each version is given a distinguishing version number. If the Library specifies
-a version number of this License which applies to it and "any later version",
-you have the option of following the terms and conditions either of that version
-or of any later version published by the Free Software Foundation. If the
-Library does not specify a license version number, you may choose any version
-ever published by the Free Software Foundation. 
-
-14. If you wish to incorporate parts of the Library into other free programs
-whose distribution conditions are incompatible with these, write to the author
-to ask for permission. For software which is copyrighted by the Free Software
-Foundation, write to the Free Software Foundation; we sometimes make exceptions
-for this. Our decision will be guided by the two goals of preserving the free
-status of all derivatives of our free software and of promoting the sharing and
-reuse of software generally. 
-
-NO WARRANTY 
-
-15. BECAUSE THE LIBRARY IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE
-LIBRARY, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED
-IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE LIBRARY "AS
-IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT
-NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
-PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE
-LIBRARY IS WITH YOU. SHOULD THE LIBRARY PROVE DEFECTIVE, YOU ASSUME THE COST OF
-ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 
-
-16. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL
-ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE
-LIBRARY AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL,
-SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR
-INABILITY TO USE THE LIBRARY (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA
-BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A
-FAILURE OF THE LIBRARY TO OPERATE WITH ANY OTHER SOFTWARE), EVEN IF SUCH HOLDER
-OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. 
-
-
-END OF TERMS AND CONDITIONS

diff --git a/sci-biology/InterMine/ChangeLog b/sci-biology/InterMine/ChangeLog
index 1c16358..48beb17 100644
--- a/sci-biology/InterMine/ChangeLog
+++ b/sci-biology/InterMine/ChangeLog
@@ -2,6 +2,10 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Marius Brehler <marbre@linux.sungazer.de>
+  InterMine-0.98.ebuild:
+  Fix license, homepage and move from git-2 to git-r3
+
 *InterMine-0.98 (07 Jan 2015)
 
   07 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

diff --git a/sci-biology/InterMine/InterMine-0.98.ebuild b/sci-biology/InterMine/InterMine-0.98.ebuild
index 6091ee6..7489da3 100644
--- a/sci-biology/InterMine/InterMine-0.98.ebuild
+++ b/sci-biology/InterMine/InterMine-0.98.ebuild
@@ -16,7 +16,7 @@ else
 	KEYWORDS="~amd64"
 fi
 
-LICENSE="InterMine"
+LICENSE="LGPL-2.1+"
 SLOT="0"
 IUSE=""
 


^ permalink raw reply related	[flat|nested] 2+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/InterMine/, licenses/
@ 2015-01-10 14:57 Justin Lecher
  0 siblings, 0 replies; 2+ messages in thread
From: Justin Lecher @ 2015-01-10 14:57 UTC (permalink / raw
  To: gentoo-commits

commit:     76ab552569845eca01c2329ef829a9757009143f
Author:     Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
AuthorDate: Sat Jan 10 13:32:28 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Jan 10 13:32:28 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=76ab5525

Fix InterMine QA issues

---
 licenses/InterMine                          | 452 ++++++++++++++++++++++++++++
 sci-biology/InterMine/InterMine-0.98.ebuild |   8 +-
 2 files changed, 456 insertions(+), 4 deletions(-)

diff --git a/licenses/InterMine b/licenses/InterMine
new file mode 100644
index 0000000..811386b
--- /dev/null
+++ b/licenses/InterMine
@@ -0,0 +1,452 @@
+InterMine is an open source project distributed under the GNU Lesser
+General Public Licence.
+
+This library is free software; you can redistribute it and/or
+modify it under the terms of the GNU Lesser General Public
+License as published by the Free Software Foundation; either
+version 2.1 of the License, or (at your option) any later version.
+
+This library is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+Lesser General Public License for more details.
+
+
+The following comment should appear in all source code files:
+
+/* 
+ * Copyright (C) 2002-2015 FlyMine
+ * 
+ * This code may be freely distributed and modified under the
+ * terms of the GNU Lesser General Public Licence.  This should
+ * be distributed with the code.  See the LICENSE file for more 
+ * information or http://www.gnu.org/copyleft/lesser.html.
+ * 
+ */
+
+
+InterMine
+Department of Genetics
+Downing Street
+Cambridge, CB2 3EH, UK
+
+www.intermine.org
+info@flymine.org
+
+
+
+The LGPL is defined as follows:
+
+
+GNU LESSER GENERAL PUBLIC LICENSE
+Version 2.1, February 1999 
+
+
+Copyright (C) 1991, 1999 Free Software Foundation, Inc.
+59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+Everyone is permitted to copy and distribute verbatim copies
+of this license document, but changing it is not allowed.
+
+[This is the first released version of the Lesser GPL.  It also counts
+ as the successor of the GNU Library Public License, version 2, hence
+ the version number 2.1.]
+
+Preamble
+
+The licenses for most software are designed to take away your freedom to share
+and change it. By contrast, the GNU General Public Licenses are intended to
+guarantee your freedom to share and change free software--to make sure the
+software is free for all its users. 
+
+This license, the Lesser General Public License, applies to some specially
+designated software packages--typically libraries--of the Free Software
+Foundation and other authors who decide to use it. You can use it too, but we
+suggest you first think carefully about whether this license or the ordinary
+General Public License is the better strategy to use in any particular case,
+based on the explanations below. 
+
+When we speak of free software, we are referring to freedom of use, not price.
+Our General Public Licenses are designed to make sure that you have the freedom
+to distribute copies of free software (and charge for this service if you wish);
+that you receive source code or can get it if you want it; that you can change
+the software and use pieces of it in new free programs; and that you are
+informed that you can do these things. 
+
+To protect your rights, we need to make restrictions that forbid distributors to
+deny you these rights or to ask you to surrender these rights. These
+restrictions translate to certain responsibilities for you if you distribute
+copies of the library or if you modify it. 
+
+For example, if you distribute copies of the library, whether gratis or for a
+fee, you must give the recipients all the rights that we gave you. You must make
+sure that they, too, receive or can get the source code. If you link other code
+with the library, you must provide complete object files to the recipients, so
+that they can relink them with the library after making changes to the library
+and recompiling it. And you must show them these terms so they know their
+rights. 
+
+We protect your rights with a two-step method: (1) we copyright the library, and
+(2) we offer you this license, which gives you legal permission to copy,
+distribute and/or modify the library. 
+
+To protect each distributor, we want to make it very clear that there is no
+warranty for the free library. Also, if the library is modified by someone else
+and passed on, the recipients should know that what they have is not the
+original version, so that the original author's reputation will not be affected
+by problems that might be introduced by others. 
+
+Finally, software patents pose a constant threat to the existence of any free
+program. We wish to make sure that a company cannot effectively restrict the
+users of a free program by obtaining a restrictive license from a patent holder.
+Therefore, we insist that any patent license obtained for a version of the
+library must be consistent with the full freedom of use specified in this
+license. 
+
+Most GNU software, including some libraries, is covered by the ordinary GNU
+General Public License. This license, the GNU Lesser General Public License,
+applies to certain designated libraries, and is quite different from the
+ordinary General Public License. We use this license for certain libraries in
+order to permit linking those libraries into non-free programs. 
+
+When a program is linked with a library, whether statically or using a shared
+library, the combination of the two is legally speaking a combined work, a
+derivative of the original library. The ordinary General Public License
+therefore permits such linking only if the entire combination fits its criteria
+of freedom. The Lesser General Public License permits more lax criteria for
+linking other code with the library. 
+
+We call this license the "Lesser" General Public License because it does Less to
+protect the user's freedom than the ordinary General Public License. It also
+provides other free software developers Less of an advantage over competing
+non-free programs. These disadvantages are the reason we use the ordinary
+General Public License for many libraries. However, the Lesser license provides
+advantages in certain special circumstances. 
+
+For example, on rare occasions, there may be a special need to encourage the
+widest possible use of a certain library, so that it becomes a de-facto
+standard. To achieve this, non-free programs must be allowed to use the library.
+A more frequent case is that a free library does the same job as widely used
+non-free libraries. In this case, there is little to gain by limiting the free
+library to free software only, so we use the Lesser General Public License. 
+
+In other cases, permission to use a particular library in non-free programs
+enables a greater number of people to use a large body of free software. For
+example, permission to use the GNU C Library in non-free programs enables many
+more people to use the whole GNU operating system, as well as its variant, the
+GNU/Linux operating system. 
+
+Although the Lesser General Public License is Less protective of the users'
+freedom, it does ensure that the user of a program that is linked with the
+Library has the freedom and the wherewithal to run that program using a modified
+version of the Library. 
+
+The precise terms and conditions for copying, distribution and modification
+follow. Pay close attention to the difference between a "work based on the
+library" and a "work that uses the library". The former contains code derived
+from the library, whereas the latter must be combined with the library in order
+to run. 
+
+
+TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
+0. This License Agreement applies to any software library or other program which
+contains a notice placed by the copyright holder or other authorized party
+saying it may be distributed under the terms of this Lesser General Public
+License (also called "this License"). Each licensee is addressed as "you". 
+
+A "library" means a collection of software functions and/or data prepared so as
+to be conveniently linked with application programs (which use some of those
+functions and data) to form executables. 
+
+The "Library", below, refers to any such software library or work which has been
+distributed under these terms. A "work based on the Library" means either the
+Library or any derivative work under copyright law: that is to say, a work
+containing the Library or a portion of it, either verbatim or with modifications
+and/or translated straightforwardly into another language. (Hereinafter,
+translation is included without limitation in the term "modification".) 
+
+"Source code" for a work means the preferred form of the work for making
+modifications to it. For a library, complete source code means all the source
+code for all modules it contains, plus any associated interface definition
+files, plus the scripts used to control compilation and installation of the
+library. 
+
+Activities other than copying, distribution and modification are not covered by
+this License; they are outside its scope. The act of running a program using the
+Library is not restricted, and output from such a program is covered only if its
+contents constitute a work based on the Library (independent of the use of the
+Library in a tool for writing it). Whether that is true depends on what the
+Library does and what the program that uses the Library does. 
+
+1. You may copy and distribute verbatim copies of the Library's complete source
+code as you receive it, in any medium, provided that you conspicuously and
+appropriately publish on each copy an appropriate copyright notice and
+disclaimer of warranty; keep intact all the notices that refer to this License
+and to the absence of any warranty; and distribute a copy of this License along
+with the Library. 
+
+You may charge a fee for the physical act of transferring a copy, and you may at
+your option offer warranty protection in exchange for a fee. 
+
+2. You may modify your copy or copies of the Library or any portion of it, thus
+forming a work based on the Library, and copy and distribute such modifications
+or work under the terms of Section 1 above, provided that you also meet all of
+these conditions: 
+
+
+a) The modified work must itself be a software library. 
+b) You must cause the files modified to carry prominent notices stating that you
+changed the files and the date of any change. 
+c) You must cause the whole of the work to be licensed at no charge to all third
+parties under the terms of this License. 
+d) If a facility in the modified Library refers to a function or a table of data
+to be supplied by an application program that uses the facility, other than as
+an argument passed when the facility is invoked, then you must make a good faith
+effort to ensure that, in the event an application does not supply such function
+or table, the facility still operates, and performs whatever part of its
+purpose remains meaningful. 
+(For example, a function in a library to compute square roots has a purpose that
+is entirely well-defined independent of the application. Therefore, Subsection
+2d requires that any application-supplied function or table used by this
+function must be optional: if the application does not supply it, the square
+root function must still compute square roots.) 
+
+These requirements apply to the modified work as a whole. If identifiable
+sections of that work are not derived from the Library, and can be reasonably
+considered independent and separate works in themselves, then this License, and
+its terms, do not apply to those sections when you distribute them as separate
+works. But when you distribute the same sections as part of a whole which is a
+work based on the Library, the distribution of the whole must be on the terms of
+this License, whose permissions for other licensees extend to the entire whole,
+and thus to each and every part regardless of who wrote it. 
+
+Thus, it is not the intent of this section to claim rights or contest your
+rights to work written entirely by you; rather, the intent is to exercise the
+right to control the distribution of derivative or collective works based on the
+Library. 
+
+In addition, mere aggregation of another work not based on the Library with the
+Library (or with a work based on the Library) on a volume of a storage or
+distribution medium does not bring the other work under the scope of this
+License. 
+
+3. You may opt to apply the terms of the ordinary GNU General Public License
+instead of this License to a given copy of the Library. To do this, you must
+alter all the notices that refer to this License, so that they refer to the
+ordinary GNU General Public License, version 2, instead of to this License. (If
+a newer version than version 2 of the ordinary GNU General Public License has
+appeared, then you can specify that version instead if you wish.) Do not make
+any other change in these notices. 
+
+Once this change is made in a given copy, it is irreversible for that copy, so
+the ordinary GNU General Public License applies to all subsequent copies and
+derivative works made from that copy. 
+
+This option is useful when you wish to copy part of the code of the Library into
+a program that is not a library. 
+
+4. You may copy and distribute the Library (or a portion or derivative of it,
+under Section 2) in object code or executable form under the terms of Sections 1
+and 2 above provided that you accompany it with the complete corresponding
+machine-readable source code, which must be distributed under the terms of
+Sections 1 and 2 above on a medium customarily used for software interchange. 
+
+If distribution of object code is made by offering access to copy from a
+designated place, then offering equivalent access to copy the source code from
+the same place satisfies the requirement to distribute the source code, even
+though third parties are not compelled to copy the source along with the object
+code. 
+
+5. A program that contains no derivative of any portion of the Library, but is
+designed to work with the Library by being compiled or linked with it, is called
+a "work that uses the Library". Such a work, in isolation, is not a derivative
+work of the Library, and therefore falls outside the scope of this License. 
+
+However, linking a "work that uses the Library" with the Library creates an
+executable that is a derivative of the Library (because it contains portions of
+the Library), rather than a "work that uses the library". The executable is
+therefore covered by this License. Section 6 states terms for distribution of
+such executables. 
+
+When a "work that uses the Library" uses material from a header file that is
+part of the Library, the object code for the work may be a derivative work of
+the Library even though the source code is not. Whether this is true is
+especially significant if the work can be linked without the Library, or if the
+work is itself a library. The threshold for this to be true is not precisely
+defined by law. 
+
+If such an object file uses only numerical parameters, data structure layouts
+and accessors, and small macros and small inline functions (ten lines or less in
+length), then the use of the object file is unrestricted, regardless of whether
+it is legally a derivative work. (Executables containing this object code plus
+portions of the Library will still fall under Section 6.) 
+
+Otherwise, if the work is a derivative of the Library, you may distribute the
+object code for the work under the terms of Section 6. Any executables
+containing that work also fall under Section 6, whether or not they are linked
+directly with the Library itself. 
+
+6. As an exception to the Sections above, you may also combine or link a "work
+that uses the Library" with the Library to produce a work containing portions of
+the Library, and distribute that work under terms of your choice, provided that
+the terms permit modification of the work for the customer's own use and reverse
+engineering for debugging such modifications. 
+
+You must give prominent notice with each copy of the work that the Library is
+used in it and that the Library and its use are covered by this License. You
+must supply a copy of this License. If the work during execution displays
+copyright notices, you must include the copyright notice for the Library among
+them, as well as a reference directing the user to the copy of this License.
+Also, you must do one of these things: 
+
+
+a) Accompany the work with the complete corresponding machine-readable source
+code for the Library including whatever changes were used in the work (which
+must be distributed under Sections 1 and 2 above); and, if the work is an
+executable linked with the Library, with the complete machine-readable "work
+that uses the Library", as object code and/or source code, so that the user can
+modify the Library and then relink to produce a modified executable containing
+the modified Library. (It is understood that the user who changes the contents
+of definitions files in the Library will not necessarily be able to recompile
+the application to use the modified definitions.) 
+b) Use a suitable shared library mechanism for linking with the Library. A
+suitable mechanism is one that (1) uses at run time a copy of the library
+already present on the user's computer system, rather than copying library
+functions into the executable, and (2) will operate properly with a modified
+version of the library, if the user installs one, as long as the modified
+version is interface-compatible with the version that the work was made with. 
+c) Accompany the work with a written offer, valid for at least three years, to
+give the same user the materials specified in Subsection 6a, above, for a charge
+no more than the cost of performing this distribution. 
+d) If distribution of the work is made by offering access to copy from a
+designated place, offer equivalent access to copy the above specified materials
+from the same place. 
+e) Verify that the user has already received a copy of these materials or that
+you have already sent this user a copy. 
+For an executable, the required form of the "work that uses the Library" must
+include any data and utility programs needed for reproducing the executable from
+it. However, as a special exception, the materials to be distributed need not
+include anything that is normally distributed (in either source or binary form)
+with the major components (compiler, kernel, and so on) of the operating system
+on which the executable runs, unless that component itself accompanies the
+executable. 
+
+It may happen that this requirement contradicts the license restrictions of
+other proprietary libraries that do not normally accompany the operating system.
+Such a contradiction means you cannot use both them and the Library together in
+an executable that you distribute. 
+
+7. You may place library facilities that are a work based on the Library
+side-by-side in a single library together with other library facilities not
+covered by this License, and distribute such a combined library, provided that
+the separate distribution of the work based on the Library and of the other
+library facilities is otherwise permitted, and provided that you do these two
+things: 
+
+
+a) Accompany the combined library with a copy of the same work based on the
+Library, uncombined with any other library facilities. This must be distributed
+under the terms of the Sections above. 
+b) Give prominent notice with the combined library of the fact that part of it
+is a work based on the Library, and explaining where to find the accompanying
+uncombined form of the same work. 
+8. You may not copy, modify, sublicense, link with, or distribute the Library
+except as expressly provided under this License. Any attempt otherwise to copy,
+modify, sublicense, link with, or distribute the Library is void, and will
+automatically terminate your rights under this License. However, parties who
+have received copies, or rights, from you under this License will not have their
+licenses terminated so long as such parties remain in full compliance. 
+
+9. You are not required to accept this License, since you have not signed it.
+However, nothing else grants you permission to modify or distribute the Library
+or its derivative works. These actions are prohibited by law if you do not
+accept this License. Therefore, by modifying or distributing the Library (or any
+work based on the Library), you indicate your acceptance of this License to do
+so, and all its terms and conditions for copying, distributing or modifying the
+Library or works based on it. 
+
+10. Each time you redistribute the Library (or any work based on the Library),
+the recipient automatically receives a license from the original licensor to
+copy, distribute, link with or modify the Library subject to these terms and
+conditions. You may not impose any further restrictions on the recipients'
+exercise of the rights granted herein. You are not responsible for enforcing
+compliance by third parties with this License. 
+
+11. If, as a consequence of a court judgment or allegation of patent
+infringement or for any other reason (not limited to patent issues), conditions
+are imposed on you (whether by court order, agreement or otherwise) that
+contradict the conditions of this License, they do not excuse you from the
+conditions of this License. If you cannot distribute so as to satisfy
+simultaneously your obligations under this License and any other pertinent
+obligations, then as a consequence you may not distribute the Library at all.
+For example, if a patent license would not permit royalty-free redistribution
+of the Library by all those who receive copies directly or indirectly through
+you, then the only way you could satisfy both it and this License would be to
+refrain entirely from distribution of the Library. 
+
+If any portion of this section is held invalid or unenforceable under any
+particular circumstance, the balance of the section is intended to apply, and
+the section as a whole is intended to apply in other circumstances. 
+
+It is not the purpose of this section to induce you to infringe any patents or
+other property right claims or to contest validity of any such claims; this
+section has the sole purpose of protecting the integrity of the free software
+distribution system which is implemented by public license practices. Many
+people have made generous contributions to the wide range of software
+distributed through that system in reliance on consistent application of that
+system; it is up to the author/donor to decide if he or she is willing to
+distribute software through any other system and a licensee cannot impose that
+choice. 
+
+This section is intended to make thoroughly clear what is believed to be a
+consequence of the rest of this License. 
+
+12. If the distribution and/or use of the Library is restricted in certain
+countries either by patents or by copyrighted interfaces, the original copyright
+holder who places the Library under this License may add an explicit 
+geographical distribution limitation excluding those countries, so that
+distribution is permitted only in or among countries not thus excluded. In such
+case, this License incorporates the limitation as if written in the body of this
+License. 
+
+13. The Free Software Foundation may publish revised and/or new versions of the
+Lesser General Public License from time to time. Such new versions will be
+similar in spirit to the present version, but may differ in detail to address
+new problems or concerns. 
+
+Each version is given a distinguishing version number. If the Library specifies
+a version number of this License which applies to it and "any later version",
+you have the option of following the terms and conditions either of that version
+or of any later version published by the Free Software Foundation. If the
+Library does not specify a license version number, you may choose any version
+ever published by the Free Software Foundation. 
+
+14. If you wish to incorporate parts of the Library into other free programs
+whose distribution conditions are incompatible with these, write to the author
+to ask for permission. For software which is copyrighted by the Free Software
+Foundation, write to the Free Software Foundation; we sometimes make exceptions
+for this. Our decision will be guided by the two goals of preserving the free
+status of all derivatives of our free software and of promoting the sharing and
+reuse of software generally. 
+
+NO WARRANTY 
+
+15. BECAUSE THE LIBRARY IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE
+LIBRARY, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED
+IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE LIBRARY "AS
+IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT
+NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
+PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE
+LIBRARY IS WITH YOU. SHOULD THE LIBRARY PROVE DEFECTIVE, YOU ASSUME THE COST OF
+ALL NECESSARY SERVICING, REPAIR OR CORRECTION. 
+
+16. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL
+ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE
+LIBRARY AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL,
+SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR
+INABILITY TO USE THE LIBRARY (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA
+BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A
+FAILURE OF THE LIBRARY TO OPERATE WITH ANY OTHER SOFTWARE), EVEN IF SUCH HOLDER
+OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. 
+
+
+END OF TERMS AND CONDITIONS

diff --git a/sci-biology/InterMine/InterMine-0.98.ebuild b/sci-biology/InterMine/InterMine-0.98.ebuild
index f5826c8..6091ee6 100644
--- a/sci-biology/InterMine/InterMine-0.98.ebuild
+++ b/sci-biology/InterMine/InterMine-0.98.ebuild
@@ -4,19 +4,19 @@
 
 EAPI=5
 
-[ "$PV" == "9999" ] && inherit git-2
+[ "$PV" == "9999" ] && inherit git-r3
 
 DESCRIPTION="Biological data warehouse integrating complex data"
-HOMEPAGE=""
+HOMEPAGE="http://github.com/intermine/intermine"
 if [ "$PV" == "9999" ]; then
 	EGIT_REPO_URI="https://github.com/intermine/intermine"
 	KEYWORDS=""
 else
 	SRC_URI=""
-	KEYWORDS=""
+	KEYWORDS="~amd64"
 fi
 
-LICENSE="LGPL-v3"
+LICENSE="InterMine"
 SLOT="0"
 IUSE=""
 


^ permalink raw reply related	[flat|nested] 2+ messages in thread

end of thread, other threads:[~2015-01-10 14:58 UTC | newest]

Thread overview: 2+ messages (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2015-01-10 14:57 [gentoo-commits] proj/sci:master commit in: sci-biology/InterMine/, licenses/ Justin Lecher
  -- strict thread matches above, loose matches on Subject: below --
2015-01-10 14:57 Justin Lecher

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox