From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id EB233138ACF for ; Sat, 10 Jan 2015 14:37:13 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 706A3E084B; Sat, 10 Jan 2015 14:37:12 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id BFF84E084B for ; Sat, 10 Jan 2015 14:37:11 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id D20453406D5 for ; Sat, 10 Jan 2015 14:37:10 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 1615DF47F for ; Sat, 10 Jan 2015 14:37:08 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1420900265.5c10a2ccb85f7ccaf754dff2edbdff03f62de1e5.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/pb-honey/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/pb-honey/ChangeLog sci-biology/pb-honey/pb-honey-14.1.15.ebuild X-VCS-Directories: sci-biology/pb-honey/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: 5c10a2ccb85f7ccaf754dff2edbdff03f62de1e5 X-VCS-Branch: master Date: Sat, 10 Jan 2015 14:37:08 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 0d79d95f-cdb4-45b0-bb93-6a8d3d5636f2 X-Archives-Hash: 503a813b34f490cc19077dcb23864d0b commit: 5c10a2ccb85f7ccaf754dff2edbdff03f62de1e5 Author: Justin Lecher gentoo org> AuthorDate: Sat Jan 10 14:31:05 2015 +0000 Commit: Justin Lecher gentoo org> CommitDate: Sat Jan 10 14:31:05 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5c10a2cc sci-biology/pb-honey: Fix license; add missing [] Package-Manager: portage-2.2.15 --- sci-biology/pb-honey/ChangeLog | 7 +++++++ sci-biology/pb-honey/pb-honey-14.1.15.ebuild | 13 +++++++------ 2 files changed, 14 insertions(+), 6 deletions(-) diff --git a/sci-biology/pb-honey/ChangeLog b/sci-biology/pb-honey/ChangeLog new file mode 100644 index 0000000..f5e93dc --- /dev/null +++ b/sci-biology/pb-honey/ChangeLog @@ -0,0 +1,7 @@ +# ChangeLog for sci-biology/pb-honey +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + + 10 Jan 2015; Justin Lecher pb-honey-14.1.15.ebuild: + Fix license; add missing [] + diff --git a/sci-biology/pb-honey/pb-honey-14.1.15.ebuild b/sci-biology/pb-honey/pb-honey-14.1.15.ebuild index c5440bb..0c3bfef 100644 --- a/sci-biology/pb-honey/pb-honey-14.1.15.ebuild +++ b/sci-biology/pb-honey/pb-honey-14.1.15.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ @@ -12,14 +12,15 @@ DESCRIPTION="Structural variant identification (SNV) using long reads (over 10kb HOMEPAGE="https://www.hgsc.bcm.edu/software/honey" SRC_URI="http://sourceforge.net/projects/pb-jelly/files/PBHoney/PBHoney_14.1.15.tgz" -LICENSE="" +LICENSE="BSD-2" SLOT="0" KEYWORDS="" IUSE="" -DEPEND="sci-biology/samtools +DEPEND=" + sci-biology/samtools sci-biology/blasr - sci-biology/pysam - dev-python/h5py - dev-python/numpy" + sci-biology/pysam[${PYTHON_USEDEP}] + dev-python/h5py[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}]" RDEPEND="${DEPEND}"