From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 3704D138A1A for ; Sat, 10 Jan 2015 14:37:13 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id E23D3E07F2; Sat, 10 Jan 2015 14:37:10 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 3B0C6E07F2 for ; Sat, 10 Jan 2015 14:37:10 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 2AED234070A for ; Sat, 10 Jan 2015 14:37:09 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id C7199F47B for ; Sat, 10 Jan 2015 14:37:07 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1420899478.fb4ef931e8f0177f06753635416595180b789995.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ESTate/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/ESTate/ChangeLog sci-biology/ESTate/ESTate-0.5.ebuild X-VCS-Directories: sci-biology/ESTate/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: fb4ef931e8f0177f06753635416595180b789995 X-VCS-Branch: master Date: Sat, 10 Jan 2015 14:37:07 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: ae998c5f-81f6-4cb2-a35b-6b65d3270eb5 X-Archives-Hash: cb68f397eefb5a50e0436a0fdb64c0a0 commit: fb4ef931e8f0177f06753635416595180b789995 Author: Justin Lecher gentoo org> AuthorDate: Sat Jan 10 14:17:58 2015 +0000 Commit: Justin Lecher gentoo org> CommitDate: Sat Jan 10 14:17:58 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=fb4ef931 sci-biology/ESTate: Soma QA and polishing Package-Manager: portage-2.2.15 --- sci-biology/ESTate/ChangeLog | 3 +++ sci-biology/ESTate/ESTate-0.5.ebuild | 28 +++++++++++++++++++--------- 2 files changed, 22 insertions(+), 9 deletions(-) diff --git a/sci-biology/ESTate/ChangeLog b/sci-biology/ESTate/ChangeLog index 0e86bdb..879e7b4 100644 --- a/sci-biology/ESTate/ChangeLog +++ b/sci-biology/ESTate/ChangeLog @@ -2,6 +2,9 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 10 Jan 2015; Justin Lecher ESTate-0.5.ebuild: + Soma QA and polishing + 09 Jan 2015; Martin Mokrejs ESTate-0.5.ebuild: improve description and emphasize the ORF finder can overcome frameshifts in CDS diff --git a/sci-biology/ESTate/ESTate-0.5.ebuild b/sci-biology/ESTate/ESTate-0.5.ebuild index 3e459b0..1622516 100644 --- a/sci-biology/ESTate/ESTate-0.5.ebuild +++ b/sci-biology/ESTate/ESTate-0.5.ebuild @@ -4,9 +4,12 @@ EAPI=5 -DESCRIPTION="ORF finding despite frameshifts, EST clustering (framefinder, estcluster, usage counter, revcomp and translate)" +inherit eutils + +DESCRIPTION="ORF finding despite frameshifts, EST clustering" HOMEPAGE="http://www.ebi.ac.uk/~guy/estate" -SRC_URI="http://www.ebi.ac.uk/~guy/estate/estate.tar.gz +SRC_URI=" + http://www.ebi.ac.uk/~guy/estate/estate.tar.gz http://www.ebi.ac.uk/~guy/estate/thesis.ps.gz" LICENSE="GPL-2" @@ -14,23 +17,30 @@ SLOT="0" KEYWORDS="~amd64" IUSE="" -DEPEND="" -RDEPEND="${DEPEND}" - S="${WORKDIR}"/estate src_prepare(){ - sed -e "s/^CC/#CC/" -e "s/^LDFLAGS/#LDFLAGS/" -e "s/^CFLAGS/#CFLAGS/" -e "s/LDFLAGS/CFLAGS/" -i src/Makefile || die + sed \ + -e "s/^CC/#CC/" \ + -e "s/^LDFLAGS/#LDFLAGS/" \ + -e "s/^CFLAGS/#CFLAGS/" \ + -e "s/LDFLAGS/CFLAGS/" \ + -i src/Makefile || die } src_install(){ dobin bin/* doman doc/man/man1/*.1 doc/man/man7/*.7 + insinto /usr/share/ESTate/etc doins etc/ESTaterc + insinto /usr/share/ESTate/example doins example/embl59* example/drosophila* - dodoc ANNOUNCE.txt README.txt - dodoc "${DISTDIR}"/thesis.ps.gz - einfo "Additionally you may want to install sci-biology/wcd which can be used by ESTate" + + dodoc ANNOUNCE.txt README.txt "${DISTDIR}"/thesis.ps.gz +} + +pkg_postinst() { + optfeature "additional features" sci-biology/wcd }