From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id D0CB3138A1A for ; Fri, 9 Jan 2015 15:30:32 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 01E31E0814; Fri, 9 Jan 2015 15:30:32 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 8C608E0814 for ; Fri, 9 Jan 2015 15:30:30 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id D69DD340707 for ; Fri, 9 Jan 2015 15:30:29 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 83B9BF361 for ; Fri, 9 Jan 2015 15:30:28 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1420817350.5742accf45fcfa12220b7ff21f6b633f0423ed04.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/wcd/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/wcd/ChangeLog sci-biology/wcd/wcd-0.6.0.ebuild sci-biology/wcd/wcd-0.6.3.ebuild X-VCS-Directories: sci-biology/wcd/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 5742accf45fcfa12220b7ff21f6b633f0423ed04 X-VCS-Branch: master Date: Fri, 9 Jan 2015 15:30:28 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 26d6a373-2f4b-4e6a-9b5f-f7ced8fb280d X-Archives-Hash: 6e6bf96c5aa0b846dab2b8f2d5189a60 commit: 5742accf45fcfa12220b7ff21f6b633f0423ed04 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Fri Jan 9 15:29:10 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Fri Jan 9 15:29:10 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5742accf sci-biology/wcd: version bump, clarify package description, add comments about addons Package-Manager: portage-2.2.7 --- sci-biology/wcd/ChangeLog | 10 ++++++++-- sci-biology/wcd/{wcd-0.6.0.ebuild => wcd-0.6.3.ebuild} | 12 +++++++++--- 2 files changed, 17 insertions(+), 5 deletions(-) diff --git a/sci-biology/wcd/ChangeLog b/sci-biology/wcd/ChangeLog index be44eea..359dd42 100644 --- a/sci-biology/wcd/ChangeLog +++ b/sci-biology/wcd/ChangeLog @@ -1,7 +1,14 @@ # ChangeLog for sci-biology/wcd -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*wcd-0.6.3 (09 Jan 2015) + + 09 Jan 2015; Martin Mokrejs +wcd-0.6.3.ebuild, + -wcd-0.6.0.ebuild: + sci-biology/wcd: version bump, clarify package description, add comments about + addons + 03 Mar 2013; Justin Lecher wcd-0.6.0.ebuild, +files/wcd-0.6.0-impl-decl.patch, +files/wcd-0.6.0-ldflags.patch, metadata.xml: @@ -13,4 +20,3 @@ 25 Jun 2011; Justin Lecher -wcd-0.6.0_beta.ebuild, +wcd-0.6.0.ebuild: Cleaned ebuild - diff --git a/sci-biology/wcd/wcd-0.6.0.ebuild b/sci-biology/wcd/wcd-0.6.3.ebuild similarity index 63% rename from sci-biology/wcd/wcd-0.6.0.ebuild rename to sci-biology/wcd/wcd-0.6.3.ebuild index eb906dc..87c5c51 100644 --- a/sci-biology/wcd/wcd-0.6.0.ebuild +++ b/sci-biology/wcd/wcd-0.6.3.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ @@ -8,9 +8,9 @@ AUTOTOOLS_AUTORECONF=true inherit autotools-utils flag-o-matic multilib -DESCRIPTION="Sequence clustering by either of: d2 function, edit distance, common word heuristics" +DESCRIPTION="EST sequence clustering by either of: d2 function, edit distance, common word heuristics" HOMEPAGE="http://code.google.com/p/wcdest/" -SRC_URI="http://wcdest.googlecode.com/files/${P}B.tar.gz -> ${P}.tar.gz" +SRC_URI="http://wcdest.googlecode.com/files/wcd-express-${PV}.tar.gz -> ${P}.tar.gz" LICENSE="GPL-2" SLOT="0" @@ -43,3 +43,9 @@ src_install() { use doc && HTML_DOCS=( doc/wcd.html doc/wcd.pdf doc/wcd.texi ) autotools-utils_src_install PREFIX=/usr LIBDIR="${D}"usr/$(get_libdir) } + +# consider providing the EMBOSS wrapper for wcd +# https://code.google.com/p/wcdest/downloads/detail?name=wcd_emboss_wrap_001.tar.gz + +# also consider ESTsim +# https://code.google.com/p/wcdest/downloads/detail?name=estsim_distrib.tar.gz&can=2&q=