[gentoo-commits] proj/sci:master commit in: sci-biology/bioperl/

[gentoo-commits] proj/sci:master commit in: sci-biology/bioperl/

[Martin Mokrejs]

commit:     66a3f970a48bb2ea70095bbbeab801efd7c617a1
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jan  7 22:27:56 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jan  7 22:27:56 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=66a3f970

bioperl/bioperl-1.6.901: dropped an ebuild with USE=+static, otherwise same in main tree

---
 sci-biology/bioperl/bioperl-1.6.901.ebuild | 81 ------------------------------
 sci-biology/bioperl/metadata.xml           |  5 --
 2 files changed, 86 deletions(-)

diff --git a/sci-biology/bioperl/bioperl-1.6.901.ebuild b/sci-biology/bioperl/bioperl-1.6.901.ebuild
deleted file mode 100644
index 98d0763..0000000
--- a/sci-biology/bioperl/bioperl-1.6.901.ebuild
+++ /dev/null
@@ -1,81 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.6.1.ebuild,v 1.3 2009/10/02 14:51:51 weaver Exp $
-
-EAPI="2"
-
-inherit perl-module
-
-SUBPROJECTS="+db +network +run"
-MIN_PV="1.6"
-
-DESCRIPTION="Perl tools for bioinformatics - Core modules"
-HOMEPAGE="http://www.bioperl.org/"
-# SRC_URI="http://www.bioperl.org/DIST/BioPerl-${PV}.tar.bz2"
-SRC_URI="http://www.cpan.org/authors/id/C/CJ/CJFIELDS/BioPerl-${PV}.tar.gz"
-
-LICENSE="Artistic GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="-minimal graphviz sqlite ${SUBPROJECTS}"
-
-CDEPEND=">=perl-core/Module-Build-0.380.0
-	dev-perl/Data-Stag
-	dev-perl/libwww-perl
-	!minimal? (
-		dev-perl/Ace
-		dev-perl/Spreadsheet-ParseExcel
-		dev-perl/Spreadsheet-WriteExcel
-		>=dev-perl/XML-SAX-0.15
-		dev-perl/Graph
-		dev-perl/SOAP-Lite
-		dev-perl/Array-Compare
-		dev-perl/SVG
-		dev-perl/XML-Simple
-		dev-perl/XML-Parser
-		dev-perl/XML-Twig
-		>=dev-perl/HTML-Parser-3.60
-		>=dev-perl/XML-Writer-0.4
-		dev-perl/Clone
-		dev-perl/XML-DOM
-		dev-perl/set-scalar
-		dev-perl/XML-XPath
-		dev-perl/XML-DOM-XPath
-		dev-perl/Algorithm-Munkres
-		dev-perl/Data-Stag
-		dev-perl/Math-Random
-		dev-perl/PostScript
-		dev-perl/Convert-Binary-C
-		dev-perl/SVG-Graph
-		dev-perl/IO-String
-		dev-perl/Class-Inspector
-		dev-perl/Sort-Naturally
-	)
-	graphviz? ( dev-perl/GraphViz )
-	sqlite? ( dev-perl/DBD-SQLite )"
-DEPEND="virtual/perl-Module-Build
-	${CDEPEND}"
-# In perl-overlay
-#	>=virtual/perl-ExtUtils-Manifest-1.52 (to CDEPEND?)
-#	>=perl-CPAN/perl-CPAN-1.81
-RDEPEND="${CDEPEND}"
-PDEPEND="!minimal? ( dev-perl/Bio-ASN1-EntrezGene )
-	db? ( >=sci-biology/bioperl-db-${MIN_PV} )
-	network? ( >=sci-biology/bioperl-network-${MIN_PV} )
-	run? ( >=sci-biology/bioperl-run-${MIN_PV} )"
-
-S="${WORKDIR}/BioPerl-${PV}"
-
-src_configure() {
-	sed -i -e '/add_post_install_script.*symlink_script.pl/d' \
-		-e "/'CPAN' *=> *1.81/d" \
-		-e "/'ExtUtils::Manifest' *=> *'1.52'/d" "${S}/Build.PL" || die
-
-	if use minimal && use graphviz; then die "USE flags minimal and graphviz cannot be used together"; fi
-	perl-module_src_configure
-}
-
-src_install() {
-	mydoc="AUTHORS BUGS FAQ"
-	perl-module_src_install
-}

diff --git a/sci-biology/bioperl/metadata.xml b/sci-biology/bioperl/metadata.xml
deleted file mode 100644
index d464821..0000000
--- a/sci-biology/bioperl/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<herd>sci-biology</herd>
-</pkgmetadata>