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From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
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Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
Message-ID: <1420667892.13ba695f8aa01b1e62f9a6c0a9f99ce940d9aadc.mmokrejs@gentoo>
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/pb-honey/
X-VCS-Repository: proj/sci
X-VCS-Files: sci-biology/pb-honey/metadata.xml sci-biology/pb-honey/pb-honey-14.1.15.ebuild
X-VCS-Directories: sci-biology/pb-honey/
X-VCS-Committer: mmokrejs
X-VCS-Committer-Name: Martin Mokrejs
X-VCS-Revision: 13ba695f8aa01b1e62f9a6c0a9f99ce940d9aadc
X-VCS-Branch: master
Date: Wed, 7 Jan 2015 21:59:09 +0000 (UTC)
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commit: 13ba695f8aa01b1e62f9a6c0a9f99ce940d9aadc
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jan 7 21:58:12 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jan 7 21:58:12 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=13ba695f
initial ebuild for a new package
---
sci-biology/pb-honey/metadata.xml | 9 +++++++++
sci-biology/pb-honey/pb-honey-14.1.15.ebuild | 25 +++++++++++++++++++++++++
2 files changed, 34 insertions(+)
diff --git a/sci-biology/pb-honey/metadata.xml b/sci-biology/pb-honey/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/pb-honey/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-biology/pb-honey/pb-honey-14.1.15.ebuild b/sci-biology/pb-honey/pb-honey-14.1.15.ebuild
new file mode 100644
index 0000000..c5440bb
--- /dev/null
+++ b/sci-biology/pb-honey/pb-honey-14.1.15.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="Structural variant identification (SNV) using long reads (over 10kbp)"
+HOMEPAGE="https://www.hgsc.bcm.edu/software/honey"
+SRC_URI="http://sourceforge.net/projects/pb-jelly/files/PBHoney/PBHoney_14.1.15.tgz"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="sci-biology/samtools
+ sci-biology/blasr
+ sci-biology/pysam
+ dev-python/h5py
+ dev-python/numpy"
+RDEPEND="${DEPEND}"