From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id EC651138A1A for ; Wed, 7 Jan 2015 21:46:38 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id BD7A4E07D0; Wed, 7 Jan 2015 21:46:37 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 49C16E07D0 for ; Wed, 7 Jan 2015 21:46:37 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id D83AA340764 for ; Wed, 7 Jan 2015 21:46:35 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 86E1DF15E for ; Wed, 7 Jan 2015 21:46:34 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1420667136.495d85d8aa9c330e890dfd0102af62b2c3cbf3bf.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ePCR/, sci-biology/ePCR/files/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/ePCR/ePCR-2.3.12.ebuild sci-biology/ePCR/files/config.mk.patch sci-biology/ePCR/metadata.xml X-VCS-Directories: sci-biology/ePCR/ sci-biology/ePCR/files/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 495d85d8aa9c330e890dfd0102af62b2c3cbf3bf X-VCS-Branch: master Date: Wed, 7 Jan 2015 21:46:34 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 89e11f35-dca5-44aa-ae79-120c3fd616d4 X-Archives-Hash: d4d37240f280c54aed870a1df5951144 commit: 495d85d8aa9c330e890dfd0102af62b2c3cbf3bf Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Wed Jan 7 21:45:36 2015 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Wed Jan 7 21:45:36 2015 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=495d85d8 dropped KEYWORDS for incomplete ebuild --- sci-biology/ePCR/ePCR-2.3.12.ebuild | 34 ++++++++++++++++++++++++++++++++++ sci-biology/ePCR/files/config.mk.patch | 18 ++++++++++++++++++ sci-biology/ePCR/metadata.xml | 9 +++++++++ 3 files changed, 61 insertions(+) diff --git a/sci-biology/ePCR/ePCR-2.3.12.ebuild b/sci-biology/ePCR/ePCR-2.3.12.ebuild new file mode 100644 index 0000000..bb82fa3 --- /dev/null +++ b/sci-biology/ePCR/ePCR-2.3.12.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=3 + +inherit eutils + +DESCRIPTION="Search for sub-sequences matching PCR primers with correct order, orientation, and spacing" +HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/e-pcr/" +SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/pub/schuler/e-PCR/e-PCR-"${PV}"-src.tar.gz" + +LICENSE="" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S=${WORKDIR}"/e-PCR-"${PV} + +src_prepare(){ + epatch ${FILESDIR}"/config.mk.patch" +} + +src_compile(){ + make -j1 srcdir=${S} objdir=${S} || die "make -j1 failed" +} + +src_install(){ + dobin e-PCR famap fahash re-PCR + dodoc README.TXT +} diff --git a/sci-biology/ePCR/files/config.mk.patch b/sci-biology/ePCR/files/config.mk.patch new file mode 100644 index 0000000..1960b43 --- /dev/null +++ b/sci-biology/ePCR/files/config.mk.patch @@ -0,0 +1,18 @@ +--- stand/config.mk.ori 2012-01-16 17:38:11.000000000 +0100 ++++ stand/config.mk 2012-01-16 17:39:12.000000000 +0100 +@@ -52,11 +52,11 @@ + + ######################################################################### + # GNU compiler flags +-CC = gcc +-CXX = g++ +-CXXFLAGS = -I$(srcdir) -I$(INCDIR) $(CC_FLAGS) $(PART_CXXFLAGS) \ ++#CC = gcc ++#CXX = g++ ++CXXFLAGS = -I$(srcdir) -I$(INCDIR) -I`pwd` \ + -DDEALLOCATE=0 $(LF64CCFLAGS) $(VERSION_FLAGS) -DSTANDALONE=1 +-LDFLAGS = $(LD_FLAGS) $(LF64LDFLAGS) -L$(tgtdir) -L$(LIBDIR) $(PART_LDFLAGS) ++LDFLAGS = $(LF64LDFLAGS) -L$(tgtdir) -L$(LIBDIR) + # $(PART_PRELIBS) $(LIBS:%=-l%) $(PART_POSTLIBS) + + LF64CCFLAGS = `getconf LFS_CFLAGS` diff --git a/sci-biology/ePCR/metadata.xml b/sci-biology/ePCR/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/ePCR/metadata.xml @@ -0,0 +1,9 @@ + + + + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + +