[gentoo-commits] proj/sci:master commit in: sci-biology/ePCR/, sci-biology/ePCR/files/

[gentoo-commits] proj/sci:master commit in: sci-biology/ePCR/, sci-biology/ePCR/files/

[Martin Mokrejs]

commit:     495d85d8aa9c330e890dfd0102af62b2c3cbf3bf
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jan  7 21:45:36 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jan  7 21:45:36 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=495d85d8

dropped KEYWORDS for incomplete ebuild

---
 sci-biology/ePCR/ePCR-2.3.12.ebuild    | 34 ++++++++++++++++++++++++++++++++++
 sci-biology/ePCR/files/config.mk.patch | 18 ++++++++++++++++++
 sci-biology/ePCR/metadata.xml          |  9 +++++++++
 3 files changed, 61 insertions(+)

diff --git a/sci-biology/ePCR/ePCR-2.3.12.ebuild b/sci-biology/ePCR/ePCR-2.3.12.ebuild
new file mode 100644
index 0000000..bb82fa3
--- /dev/null
+++ b/sci-biology/ePCR/ePCR-2.3.12.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+inherit eutils
+
+DESCRIPTION="Search for sub-sequences matching PCR primers with correct order, orientation, and spacing"
+HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/e-pcr/"
+SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/pub/schuler/e-PCR/e-PCR-"${PV}"-src.tar.gz"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S=${WORKDIR}"/e-PCR-"${PV}
+
+src_prepare(){
+	epatch ${FILESDIR}"/config.mk.patch"
+}
+
+src_compile(){
+	make -j1 srcdir=${S} objdir=${S} || die "make -j1 failed"
+}
+
+src_install(){
+	dobin e-PCR famap fahash re-PCR
+	dodoc README.TXT
+}

diff --git a/sci-biology/ePCR/files/config.mk.patch b/sci-biology/ePCR/files/config.mk.patch
new file mode 100644
index 0000000..1960b43
--- /dev/null
+++ b/sci-biology/ePCR/files/config.mk.patch
@@ -0,0 +1,18 @@
+--- stand/config.mk.ori	2012-01-16 17:38:11.000000000 +0100
++++ stand/config.mk	2012-01-16 17:39:12.000000000 +0100
+@@ -52,11 +52,11 @@
+ 
+ #########################################################################
+ # GNU compiler flags
+-CC = gcc
+-CXX = g++
+-CXXFLAGS = -I$(srcdir) -I$(INCDIR) $(CC_FLAGS) $(PART_CXXFLAGS) \
++#CC = gcc
++#CXX = g++
++CXXFLAGS = -I$(srcdir) -I$(INCDIR) -I`pwd` \
+ 	-DDEALLOCATE=0 $(LF64CCFLAGS) $(VERSION_FLAGS) -DSTANDALONE=1
+-LDFLAGS = $(LD_FLAGS) $(LF64LDFLAGS) -L$(tgtdir) -L$(LIBDIR) $(PART_LDFLAGS) 
++LDFLAGS = $(LF64LDFLAGS) -L$(tgtdir) -L$(LIBDIR) 
+ #	$(PART_PRELIBS) $(LIBS:%=-l%) $(PART_POSTLIBS)
+ 
+ LF64CCFLAGS = `getconf LFS_CFLAGS` 

diff --git a/sci-biology/ePCR/metadata.xml b/sci-biology/ePCR/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/ePCR/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>