From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ePCR/, sci-biology/ePCR/files/
Date: Wed, 7 Jan 2015 21:46:34 +0000 (UTC) [thread overview]
Message-ID: <1420667136.495d85d8aa9c330e890dfd0102af62b2c3cbf3bf.mmokrejs@gentoo> (raw)
commit: 495d85d8aa9c330e890dfd0102af62b2c3cbf3bf
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jan 7 21:45:36 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jan 7 21:45:36 2015 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=495d85d8
dropped KEYWORDS for incomplete ebuild
---
sci-biology/ePCR/ePCR-2.3.12.ebuild | 34 ++++++++++++++++++++++++++++++++++
sci-biology/ePCR/files/config.mk.patch | 18 ++++++++++++++++++
sci-biology/ePCR/metadata.xml | 9 +++++++++
3 files changed, 61 insertions(+)
diff --git a/sci-biology/ePCR/ePCR-2.3.12.ebuild b/sci-biology/ePCR/ePCR-2.3.12.ebuild
new file mode 100644
index 0000000..bb82fa3
--- /dev/null
+++ b/sci-biology/ePCR/ePCR-2.3.12.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+inherit eutils
+
+DESCRIPTION="Search for sub-sequences matching PCR primers with correct order, orientation, and spacing"
+HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/e-pcr/"
+SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/pub/schuler/e-PCR/e-PCR-"${PV}"-src.tar.gz"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S=${WORKDIR}"/e-PCR-"${PV}
+
+src_prepare(){
+ epatch ${FILESDIR}"/config.mk.patch"
+}
+
+src_compile(){
+ make -j1 srcdir=${S} objdir=${S} || die "make -j1 failed"
+}
+
+src_install(){
+ dobin e-PCR famap fahash re-PCR
+ dodoc README.TXT
+}
diff --git a/sci-biology/ePCR/files/config.mk.patch b/sci-biology/ePCR/files/config.mk.patch
new file mode 100644
index 0000000..1960b43
--- /dev/null
+++ b/sci-biology/ePCR/files/config.mk.patch
@@ -0,0 +1,18 @@
+--- stand/config.mk.ori 2012-01-16 17:38:11.000000000 +0100
++++ stand/config.mk 2012-01-16 17:39:12.000000000 +0100
+@@ -52,11 +52,11 @@
+
+ #########################################################################
+ # GNU compiler flags
+-CC = gcc
+-CXX = g++
+-CXXFLAGS = -I$(srcdir) -I$(INCDIR) $(CC_FLAGS) $(PART_CXXFLAGS) \
++#CC = gcc
++#CXX = g++
++CXXFLAGS = -I$(srcdir) -I$(INCDIR) -I`pwd` \
+ -DDEALLOCATE=0 $(LF64CCFLAGS) $(VERSION_FLAGS) -DSTANDALONE=1
+-LDFLAGS = $(LD_FLAGS) $(LF64LDFLAGS) -L$(tgtdir) -L$(LIBDIR) $(PART_LDFLAGS)
++LDFLAGS = $(LF64LDFLAGS) -L$(tgtdir) -L$(LIBDIR)
+ # $(PART_PRELIBS) $(LIBS:%=-l%) $(PART_POSTLIBS)
+
+ LF64CCFLAGS = `getconf LFS_CFLAGS`
diff --git a/sci-biology/ePCR/metadata.xml b/sci-biology/ePCR/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/ePCR/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
reply other threads:[~2015-01-07 21:46 UTC|newest]
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