[gentoo-commits] proj/sci:master commit in: sci-libs/libmaus/, sci-biology/biobambam/

["Justin Lecher" <jlec@gentoo.org>]

commit:     be2f4981d032c159c47549e819b668772b468566
Author:     mschubert <mschu.dev <AT> gmail <DOT> com>
AuthorDate: Sat Dec 20 20:00:02 2014 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Dec 20 20:00:02 2014 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=be2f4981

add metadata.xml

---
 sci-biology/biobambam/metadata.xml | 15 +++++++++++++++
 sci-libs/libmaus/metadata.xml      | 14 ++++++++++++++
 2 files changed, 29 insertions(+)

diff --git a/sci-biology/biobambam/metadata.xml b/sci-biology/biobambam/metadata.xml
new file mode 100644
index 0000000..9dab650
--- /dev/null
+++ b/sci-biology/biobambam/metadata.xml
@@ -0,0 +1,15 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci-biology</herd>
+<longdescription lang="en">
+This package contains some tools for processing BAM files including
+
+bamcollate2: reads BAM and writes BAM reordered such that alignment or collated by query name
+bammarkduplicates: reads BAM and writes BAM with duplicate alignments marked using the BAM flags field
+bammaskflags: reads BAM and writes BAM while masking (removing) bits from the flags column
+bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading.
+bamsort: reads BAM and writes BAM resorted by coordinates or query name
+bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name
+</longdescription>
+</pkgmetadata>

diff --git a/sci-libs/libmaus/metadata.xml b/sci-libs/libmaus/metadata.xml
new file mode 100644
index 0000000..3d92636
--- /dev/null
+++ b/sci-libs/libmaus/metadata.xml
@@ -0,0 +1,14 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci-libs</herd>
+<longdescription lang="en">
+libmaus is a collection of data structures and algorithms. It contains
+
+I/O classes (single byte and UTF-8)
+	bitio classes (input, output and various forms of bit level manipulation)
+	text indexing classes (suffix and LCP array, fulltext and minute (FM), ...)
+	BAM sequence alignment files input/output (simple and collating)
+	and many lower level support classes.
+</longdescription>
+</pkgmetadata>