From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 0FE06138ACE for ; Thu, 13 Nov 2014 13:00:45 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 7223AE099E; Thu, 13 Nov 2014 13:00:44 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id B24BAE099E for ; Thu, 13 Nov 2014 13:00:43 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id A7E4834048A for ; Thu, 13 Nov 2014 13:00:42 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 4CBF3A0D9 for ; Thu, 13 Nov 2014 13:00:41 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1415882264.2f57a1458981371ddbaeec83168e30b231075c6b.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/quast/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/quast/ChangeLog sci-biology/quast/metadata.xml sci-biology/quast/quast-2.2.ebuild X-VCS-Directories: sci-biology/quast/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: 2f57a1458981371ddbaeec83168e30b231075c6b X-VCS-Branch: master Date: Thu, 13 Nov 2014 13:00:41 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 333b067d-de62-490d-9fdb-ed275660ee14 X-Archives-Hash: a311c0a832f9fe20e778f51b770767b0 commit: 2f57a1458981371ddbaeec83168e30b231075c6b Author: Justin Lecher gentoo org> AuthorDate: Thu Nov 13 12:37:44 2014 +0000 Commit: Justin Lecher gentoo org> CommitDate: Thu Nov 13 12:37:44 2014 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2f57a145 sci-biology/quast: Bump to new python eclasses Package-Manager: portage-2.2.14 --- sci-biology/quast/ChangeLog | 3 +++ sci-biology/quast/metadata.xml | 10 +++++----- sci-biology/quast/quast-2.2.ebuild | 26 +++++++++++++++----------- 3 files changed, 23 insertions(+), 16 deletions(-) diff --git a/sci-biology/quast/ChangeLog b/sci-biology/quast/ChangeLog index 578e834..ccf3a0e 100644 --- a/sci-biology/quast/ChangeLog +++ b/sci-biology/quast/ChangeLog @@ -2,6 +2,9 @@ # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 13 Nov 2014; Justin Lecher quast-2.2.ebuild, metadata.xml: + Bump to new python eclasses + *quast-2.2 (23 Mar 2014) 23 Mar 2014; Martin Mokrejs +metadata.xml, diff --git a/sci-biology/quast/metadata.xml b/sci-biology/quast/metadata.xml index 07b5255..2bc8930 100644 --- a/sci-biology/quast/metadata.xml +++ b/sci-biology/quast/metadata.xml @@ -1,9 +1,9 @@ - sci-biology - - mmokrejs@fold.natur.cuni.cz - Martin Mokrejs - + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + diff --git a/sci-biology/quast/quast-2.2.ebuild b/sci-biology/quast/quast-2.2.ebuild index 5f6c9b9..3839147 100644 --- a/sci-biology/quast/quast-2.2.ebuild +++ b/sci-biology/quast/quast-2.2.ebuild @@ -4,31 +4,35 @@ EAPI=5 -inherit python +PYTHON_COMPAT=( python2_7 ) + +inherit python-r1 DESCRIPTION="Compare quality of multiple genome assemblies to each other" HOMEPAGE="http://bioinf.spbau.ru/QUAST" -SRC_URI="http://sourceforge.net/projects/quast/files/"$P".tar.gz" +SRC_URI="http://sourceforge.net/projects/quast/files/${P}.tar.gz" LICENSE="GPL-2" SLOT="0" KEYWORDS="" IUSE="" -DEPEND="dev-python/matplotlib - sci-biology/mummer - sci-biology/glimmerhmm" -# sci-biology/GAGE -# sci-biology/GeneMarkS -# sci-biology/MetaGeneMark" +DEPEND=" + dev-python/matplotlib[${PYTHON_USEDEP}] + sci-biology/mummer + sci-biology/glimmerhmm" +# sci-biology/GAGE +# sci-biology/GeneMarkS +# sci-biology/MetaGeneMark" # the above packages need to be created first -RDEPEND="${DEPEND} - dev-lang/perl" +RDEPEND="${DEPEND}" src_install(){ - dobin quast.py metaquast.py + python_foreach_impl python_newscript quast.py quast + python_foreach_impl python_newscript metaquast.py metaquast + dodoc manual.html CHANGES # TODO: install lib/ subdirectory contents into some PATH and PYTHON_PATH