From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 1240E138825 for ; Mon, 10 Nov 2014 15:14:32 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id EAB81E0942; Mon, 10 Nov 2014 15:14:28 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 20ADCE092C for ; Mon, 10 Nov 2014 15:14:28 +0000 (UTC) Received: from oystercatcher.gentoo.org (oystercatcher.gentoo.org [148.251.78.52]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id E29B5340445 for ; Mon, 10 Nov 2014 15:14:26 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by oystercatcher.gentoo.org (Postfix) with ESMTP id 58A5F9D90 for ; Mon, 10 Nov 2014 15:14:23 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1415625492.8084f5f52b096ed560f8889c736a10060911e0f8.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/genseed/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/genseed/ChangeLog sci-biology/genseed/genseed-1.0.22.ebuild sci-biology/genseed/metadata.xml X-VCS-Directories: sci-biology/genseed/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: 8084f5f52b096ed560f8889c736a10060911e0f8 X-VCS-Branch: master Date: Mon, 10 Nov 2014 15:14:23 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 375c2873-2080-45e4-9b2d-26f0980e7a8b X-Archives-Hash: 9407041ec01b9ac7dd46bfc9417bb8cc commit: 8084f5f52b096ed560f8889c736a10060911e0f8 Author: Justin Lecher gentoo org> AuthorDate: Mon Nov 10 13:18:12 2014 +0000 Commit: Justin Lecher gentoo org> CommitDate: Mon Nov 10 13:18:12 2014 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=8084f5f5 sci-biology/genseed: Bump to EAPI=5 Package-Manager: portage-2.2.14 --- sci-biology/genseed/ChangeLog | 6 +++++- sci-biology/genseed/genseed-1.0.22.ebuild | 19 ++++++++++++------- sci-biology/genseed/metadata.xml | 10 +++++----- 3 files changed, 22 insertions(+), 13 deletions(-) diff --git a/sci-biology/genseed/ChangeLog b/sci-biology/genseed/ChangeLog index b60e59d..d52eb15 100644 --- a/sci-biology/genseed/ChangeLog +++ b/sci-biology/genseed/ChangeLog @@ -1,7 +1,11 @@ # ChangeLog for sci-biology/genseed -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 10 Nov 2014; Justin Lecher genseed-1.0.22.ebuild, + metadata.xml: + Bump to EAPI=5 + 13 Dec 2011; Martin Mokrejs genseed-1.0.22.ebuild: ebuild doc cleanup genseed-1.0.22.ebuild diff --git a/sci-biology/genseed/genseed-1.0.22.ebuild b/sci-biology/genseed/genseed-1.0.22.ebuild index 1bf97f9..f87e06f 100644 --- a/sci-biology/genseed/genseed-1.0.22.ebuild +++ b/sci-biology/genseed/genseed-1.0.22.ebuild @@ -2,6 +2,8 @@ # Distributed under the terms of the GNU General Public License v2 # $Header: $ +EAPI=5 + DESCRIPTION="Seed-driven progressive assembly program using legacy NCBI blast, CAP3, and optionally cross_match" HOMEPAGE="http://www.coccidia.icb.usp.br/genseed/" SRC_URI="http://www.coccidia.icb.usp.br/genseed/download/${P}.tar.gz" @@ -11,14 +13,17 @@ SLOT="0" KEYWORDS="~x86 ~amd64" IUSE="" - # I am not sure whether we want to introduce yet another USE variable "phrap" - # This tools optionally uses cross_match if vector masking is required - # (sci-biology/phrap but it will be installed only by users having that licence. -DEPEND="sci-biology/cap3-bin - dev-lang/perl - sci-biology/ncbi-tools" + # I am not sure whether we want to introduce yet another USE variable "phrap" + # This tools optionally uses cross_match if vector masking is required + # (sci-biology/phrap but it will be installed only by users having that licence. +DEPEND=" + sci-biology/cap3-bin + dev-lang/perl + sci-biology/ncbi-tools" RDEPEND="" +S="${WORKDIR}" + src_install() { - dobin genseed.pl + newbin ${PN}.pl ${PN} } diff --git a/sci-biology/genseed/metadata.xml b/sci-biology/genseed/metadata.xml index 07b5255..2bc8930 100644 --- a/sci-biology/genseed/metadata.xml +++ b/sci-biology/genseed/metadata.xml @@ -1,9 +1,9 @@ - sci-biology - - mmokrejs@fold.natur.cuni.cz - Martin Mokrejs - + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs +