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* [gentoo-commits] proj/sci:master commit in: sci-chemistry/pymol/files/, sci-chemistry/pymol/
@ 2014-10-20  7:24 Justin Lecher
  0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher @ 2014-10-20  7:24 UTC (permalink / raw
  To: gentoo-commits

commit:     0ea640fba1bbdfa7a73a48ee8dcbe81185f21193
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Oct 20 07:19:12 2014 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Oct 20 07:19:12 2014 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0ea640fb

sci-chemistry/pymol: Fix upstream buildsystem

Package-Manager: portage-2.2.14_rc1

---
 sci-chemistry/pymol/ChangeLog                      |  4 ++++
 sci-chemistry/pymol/files/pymol-9999-options.patch | 15 +++++++++++++++
 sci-chemistry/pymol/pymol-9999.ebuild              |  4 ++++
 3 files changed, 23 insertions(+)

diff --git a/sci-chemistry/pymol/ChangeLog b/sci-chemistry/pymol/ChangeLog
index bb3c5db..2cce805 100644
--- a/sci-chemistry/pymol/ChangeLog
+++ b/sci-chemistry/pymol/ChangeLog
@@ -2,6 +2,10 @@
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  20 Oct 2014; Justin Lecher <jlec@gentoo.org> pymol-9999.ebuild,
+  +files/pymol-9999-options.patch:
+  Fix upstream buildsystem
+
   17 Oct 2014; Justin Lecher <jlec@gentoo.org> pymol-9999.ebuild:
   Import tree changes
 

diff --git a/sci-chemistry/pymol/files/pymol-9999-options.patch b/sci-chemistry/pymol/files/pymol-9999-options.patch
new file mode 100644
index 0000000..ce05e17
--- /dev/null
+++ b/sci-chemistry/pymol/files/pymol-9999-options.patch
@@ -0,0 +1,15 @@
+ pymol/setup.py | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/pymol/setup.py b/pymol/setup.py
+index c446d6c..b7b353b 100644
+--- a/pymol/setup.py
++++ b/pymol/setup.py
+@@ -51,6 +51,7 @@ def CCompiler_compile(self, sources, output_dir=None, macros=None,
+ class options:
+     osx_frameworks = False
+     jobs = int(os.getenv('JOBS', 0))
++    no_libxml = False
+ 
+ try:
+     import argparse

diff --git a/sci-chemistry/pymol/pymol-9999.ebuild b/sci-chemistry/pymol/pymol-9999.ebuild
index b45111e..a811e69 100644
--- a/sci-chemistry/pymol/pymol-9999.ebuild
+++ b/sci-chemistry/pymol/pymol-9999.ebuild
@@ -37,6 +37,10 @@ DEPEND="
 	web? ( !dev-python/webpy[${PYTHON_USEDEP}] )"
 RDEPEND="${DEPEND}"
 
+PATCHES=(
+	"${FILESDIR}"/${P}-options.patch
+)
+
 src_unpack() {
 	unpack ${A}
 	subversion_src_unpack


^ permalink raw reply related	[flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/pymol/files/, sci-chemistry/pymol/
@ 2014-11-05  7:24 Justin Lecher
  0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher @ 2014-11-05  7:24 UTC (permalink / raw
  To: gentoo-commits

commit:     0acc85d3a08b77620f564c32e16480ad0a7ea034
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Nov  5 07:24:18 2014 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Nov  5 07:24:18 2014 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0acc85d3

sci-chemistry/pymol: Drop obsolete patches

Package-Manager: portage-2.2.14

---
 sci-chemistry/pymol/ChangeLog                      |  5 ++
 sci-chemistry/pymol/files/pymol-9999-listing.patch | 17 ------
 sci-chemistry/pymol/files/pymol-9999-options.patch | 15 -----
 sci-chemistry/pymol/files/pymol-9999-tk8.6.patch   | 66 ----------------------
 sci-chemistry/pymol/pymol-9999.ebuild              |  2 -
 5 files changed, 5 insertions(+), 100 deletions(-)

diff --git a/sci-chemistry/pymol/ChangeLog b/sci-chemistry/pymol/ChangeLog
index c55379b..2f4a843 100644
--- a/sci-chemistry/pymol/ChangeLog
+++ b/sci-chemistry/pymol/ChangeLog
@@ -2,6 +2,11 @@
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  05 Nov 2014; Justin Lecher <jlec@gentoo.org> pymol-9999.ebuild,
+  -files/pymol-9999-listing.patch, -files/pymol-9999-options.patch,
+  -files/pymol-9999-tk8.6.patch:
+  Drop obsolete patches
+
   31 Oct 2014; Justin Lecher <jlec@gentoo.org> files/pymol-9999-tk8.6.patch:
   Update patch to upstream suggestion
 

diff --git a/sci-chemistry/pymol/files/pymol-9999-listing.patch b/sci-chemistry/pymol/files/pymol-9999-listing.patch
deleted file mode 100644
index 1b4039c..0000000
--- a/sci-chemistry/pymol/files/pymol-9999-listing.patch
+++ /dev/null
@@ -1,17 +0,0 @@
- pymol/modules/pymol/plugins/repository.py | 3 ++-
- 1 file changed, 2 insertions(+), 1 deletion(-)
-
-diff --git a/pymol/modules/pymol/plugins/repository.py b/pymol/modules/pymol/plugins/repository.py
-index 9697f68..9820fac 100644
---- a/pymol/modules/pymol/plugins/repository.py
-+++ b/pymol/modules/pymol/plugins/repository.py
-@@ -182,7 +182,8 @@ class GithubRepository(HttpRepository):
- 
-     def fetchjson(self, url):
-         handle = urlopen('https://api.github.com' + url)
--        return eval(handle.read())
-+        ret = handle.read().replace("false", "False")
-+        return eval(ret)
- 
- class LocalRepository(Repository):
-     def __init__(self, url):

diff --git a/sci-chemistry/pymol/files/pymol-9999-options.patch b/sci-chemistry/pymol/files/pymol-9999-options.patch
deleted file mode 100644
index ce05e17..0000000
--- a/sci-chemistry/pymol/files/pymol-9999-options.patch
+++ /dev/null
@@ -1,15 +0,0 @@
- pymol/setup.py | 1 +
- 1 file changed, 1 insertion(+)
-
-diff --git a/pymol/setup.py b/pymol/setup.py
-index c446d6c..b7b353b 100644
---- a/pymol/setup.py
-+++ b/pymol/setup.py
-@@ -51,6 +51,7 @@ def CCompiler_compile(self, sources, output_dir=None, macros=None,
- class options:
-     osx_frameworks = False
-     jobs = int(os.getenv('JOBS', 0))
-+    no_libxml = False
- 
- try:
-     import argparse

diff --git a/sci-chemistry/pymol/files/pymol-9999-tk8.6.patch b/sci-chemistry/pymol/files/pymol-9999-tk8.6.patch
deleted file mode 100644
index 529de84..0000000
--- a/sci-chemistry/pymol/files/pymol-9999-tk8.6.patch
+++ /dev/null
@@ -1,66 +0,0 @@
-commit afb1c62e05d56dfbe2940f4f939428739d834f05
-Author: Thomas Holder <thomas.holder@schrodinger.com>
-Date:   Thu Oct 30 17:04:45 2014 -0400
-
-    fix apbs_tools for tcl/tk 8.6
-
-diff --git a/modules/pmg_tk/startup/apbs_tools.py b/modules/pmg_tk/startup/apbs_tools.py
-index 9b76070..c9f649c 100644
---- a/modules/pmg_tk/startup/apbs_tools.py
-+++ b/modules/pmg_tk/startup/apbs_tools.py
-@@ -658,7 +658,6 @@ class APBSTools2:
-         page = self.notebook.add('Configuration')
- 
-         group = Pmw.Group(page,tag_text='Dielectric Constants')
--        group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
-         group.grid(column=0, row=0)
-         self.interior_dielectric = Pmw.EntryField(group.interior(),labelpos='w',
-                                    label_text = 'Protein Dielectric:',
-@@ -677,7 +676,6 @@ class APBSTools2:
-             #entry.pack(side='left',fill='both',expand=1,padx=4) # side-by-side
-             entry.pack(fill='x',expand=1,padx=4,pady=1) # vertical
-         group = Pmw.Group(page,tag_text='Other')
--        group.pack(fill='both',expand=1, padx=4, pady=5)
-         group.grid(column=1, row=1,columnspan=4)
-         self.max_mem_allowed = Pmw.EntryField(group.interior(),labelpos='w',
-                                               label_text = 'Maximum Memory Allowed (MB):',
-@@ -735,7 +733,6 @@ class APBSTools2:
- 
- 
-         group = Pmw.Group(page,tag_text='Ions')
--        group.pack(fill='both',expand=1, padx=4, pady=5)
-         group.grid(column=0, row=1, )
-         self.ion_plus_one_conc = Pmw.EntryField(group.interior(),
-                                                 labelpos='w',
-@@ -794,7 +791,6 @@ class APBSTools2:
-             entry.pack(fill='x',expand=1,padx=4)
- 
-         group = Pmw.Group(page,tag_text = 'Coarse Mesh Length')
--        group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
-         group.grid(column = 1, row = 0)
-         for coord in 'x y z'.split():
-             setattr(self,'grid_coarse_%s'%coord,Pmw.EntryField(group.interior(),
-@@ -809,7 +805,6 @@ class APBSTools2:
- 
- 
-         group = Pmw.Group(page,tag_text = 'Fine Mesh Length')
--        group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
-         group.grid(column = 2, row = 0)
-         for coord in 'x y z'.split():
-             setattr(self,'grid_fine_%s'%coord,Pmw.EntryField(group.interior(),
-@@ -824,7 +819,6 @@ class APBSTools2:
- 
- 
-         group = Pmw.Group(page,tag_text = 'Grid Center')
--        group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
-         group.grid(column = 3, row = 0)
-         for coord in 'x y z'.split():
-             setattr(self,'grid_center_%s'%coord,Pmw.EntryField(group.interior(),
-@@ -838,7 +832,6 @@ class APBSTools2:
-             getattr(self,'grid_center_%s'%coord).pack(fill='x', expand=1, padx=4, pady=1)
- 
-         group = Pmw.Group(page,tag_text = 'Grid Points')
--        group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
-         group.grid(column = 4, row = 0)
-         for coord in 'x y z'.split():
-             setattr(self,'grid_points_%s'%coord,Pmw.EntryField(group.interior(),

diff --git a/sci-chemistry/pymol/pymol-9999.ebuild b/sci-chemistry/pymol/pymol-9999.ebuild
index 957afd0..56c62a8 100644
--- a/sci-chemistry/pymol/pymol-9999.ebuild
+++ b/sci-chemistry/pymol/pymol-9999.ebuild
@@ -37,8 +37,6 @@ DEPEND="
 	web? ( !dev-python/webpy[${PYTHON_USEDEP}] )"
 RDEPEND="${DEPEND}"
 
-PATCHES=( "${FILESDIR}"/${P}-tk8.6.patch )
-
 src_unpack() {
 	unpack ${A}
 	subversion_src_unpack


^ permalink raw reply related	[flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/pymol/files/, sci-chemistry/pymol/
@ 2014-11-05  7:24 Justin Lecher
  0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher @ 2014-11-05  7:24 UTC (permalink / raw
  To: gentoo-commits

commit:     de472bbdde04ced59132ab600b63417a5f9b839c
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Oct 31 07:19:20 2014 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Nov  3 07:15:05 2014 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=de472bbd

sci-chemistry/pymol: Update patch to upstream suggestion

Package-Manager: portage-2.2.14

---
 sci-chemistry/pymol/ChangeLog                    |   3 +
 sci-chemistry/pymol/files/pymol-9999-tk8.6.patch | 129 +++--------------------
 2 files changed, 19 insertions(+), 113 deletions(-)

diff --git a/sci-chemistry/pymol/ChangeLog b/sci-chemistry/pymol/ChangeLog
index 15af521..c55379b 100644
--- a/sci-chemistry/pymol/ChangeLog
+++ b/sci-chemistry/pymol/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  31 Oct 2014; Justin Lecher <jlec@gentoo.org> files/pymol-9999-tk8.6.patch:
+  Update patch to upstream suggestion
+
   30 Oct 2014; Justin Lecher <jlec@gentoo.org> pymol-9999.ebuild,
   +files/pymol-9999-tk8.6.patch:
   Make it really multi py ABI ready; use internal apbs plugin

diff --git a/sci-chemistry/pymol/files/pymol-9999-tk8.6.patch b/sci-chemistry/pymol/files/pymol-9999-tk8.6.patch
index c4fa209..529de84 100644
--- a/sci-chemistry/pymol/files/pymol-9999-tk8.6.patch
+++ b/sci-chemistry/pymol/files/pymol-9999-tk8.6.patch
@@ -1,163 +1,66 @@
- pymol/modules/pmg_tk/startup/apbs_tools.py | 36 +++++++++++++++---------------
- 1 file changed, 18 insertions(+), 18 deletions(-)
+commit afb1c62e05d56dfbe2940f4f939428739d834f05
+Author: Thomas Holder <thomas.holder@schrodinger.com>
+Date:   Thu Oct 30 17:04:45 2014 -0400
 
-diff --git a/pymol/modules/pmg_tk/startup/apbs_tools.py b/pymol/modules/pmg_tk/startup/apbs_tools.py
-index 9b76070..ad82df3 100644
---- a/pymol/modules/pmg_tk/startup/apbs_tools.py
-+++ b/pymol/modules/pmg_tk/startup/apbs_tools.py
-@@ -612,7 +612,7 @@ class APBSTools2:
-         # Set up the Main page
-         page = self.notebook.add('Main')
-         group = Pmw.Group(page,tag_text='Main options')
--        group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
-+        group.grid(padx = 10, pady = 5, sticky=(N, S, E, W))
-         self.selection = Pmw.EntryField(group.interior(),
-                                         labelpos='w',
-                                         label_text='Selection to use: ',
-@@ -658,7 +658,7 @@ class APBSTools2:
+    fix apbs_tools for tcl/tk 8.6
+
+diff --git a/modules/pmg_tk/startup/apbs_tools.py b/modules/pmg_tk/startup/apbs_tools.py
+index 9b76070..c9f649c 100644
+--- a/modules/pmg_tk/startup/apbs_tools.py
++++ b/modules/pmg_tk/startup/apbs_tools.py
+@@ -658,7 +658,6 @@ class APBSTools2:
          page = self.notebook.add('Configuration')
  
          group = Pmw.Group(page,tag_text='Dielectric Constants')
 -        group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
-+        group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
          group.grid(column=0, row=0)
          self.interior_dielectric = Pmw.EntryField(group.interior(),labelpos='w',
                                     label_text = 'Protein Dielectric:',
-@@ -677,7 +677,7 @@ class APBSTools2:
+@@ -677,7 +676,6 @@ class APBSTools2:
              #entry.pack(side='left',fill='both',expand=1,padx=4) # side-by-side
              entry.pack(fill='x',expand=1,padx=4,pady=1) # vertical
          group = Pmw.Group(page,tag_text='Other')
 -        group.pack(fill='both',expand=1, padx=4, pady=5)
-+        group.grid(padx=4, pady=5, sticky=(N, S, E, W))
          group.grid(column=1, row=1,columnspan=4)
          self.max_mem_allowed = Pmw.EntryField(group.interior(),labelpos='w',
                                                label_text = 'Maximum Memory Allowed (MB):',
-@@ -735,7 +735,7 @@ class APBSTools2:
+@@ -735,7 +733,6 @@ class APBSTools2:
  
  
          group = Pmw.Group(page,tag_text='Ions')
 -        group.pack(fill='both',expand=1, padx=4, pady=5)
-+        group.grid(padx=4, pady=5, sticky=(N, S, E, W))
          group.grid(column=0, row=1, )
          self.ion_plus_one_conc = Pmw.EntryField(group.interior(),
                                                  labelpos='w',
-@@ -794,7 +794,7 @@ class APBSTools2:
+@@ -794,7 +791,6 @@ class APBSTools2:
              entry.pack(fill='x',expand=1,padx=4)
  
          group = Pmw.Group(page,tag_text = 'Coarse Mesh Length')
 -        group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
-+        group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
          group.grid(column = 1, row = 0)
          for coord in 'x y z'.split():
              setattr(self,'grid_coarse_%s'%coord,Pmw.EntryField(group.interior(),
-@@ -809,7 +809,7 @@ class APBSTools2:
+@@ -809,7 +805,6 @@ class APBSTools2:
  
  
          group = Pmw.Group(page,tag_text = 'Fine Mesh Length')
 -        group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
-+        group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
          group.grid(column = 2, row = 0)
          for coord in 'x y z'.split():
              setattr(self,'grid_fine_%s'%coord,Pmw.EntryField(group.interior(),
-@@ -824,7 +824,7 @@ class APBSTools2:
+@@ -824,7 +819,6 @@ class APBSTools2:
  
  
          group = Pmw.Group(page,tag_text = 'Grid Center')
 -        group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
-+        group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
          group.grid(column = 3, row = 0)
          for coord in 'x y z'.split():
              setattr(self,'grid_center_%s'%coord,Pmw.EntryField(group.interior(),
-@@ -838,7 +838,7 @@ class APBSTools2:
+@@ -838,7 +832,6 @@ class APBSTools2:
              getattr(self,'grid_center_%s'%coord).pack(fill='x', expand=1, padx=4, pady=1)
  
          group = Pmw.Group(page,tag_text = 'Grid Points')
 -        group.pack(fill = 'both', expand = 1, padx = 4, pady = 5)
-+        group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
          group.grid(column = 4, row = 0)
          for coord in 'x y z'.split():
              setattr(self,'grid_points_%s'%coord,Pmw.EntryField(group.interior(),
-@@ -856,7 +856,7 @@ class APBSTools2:
-         page.grid_columnconfigure(5,weight=1)
-         page = self.notebook.add('Program Locations')
-         group = Pmw.Group(page,tag_text='Locations')
--        group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
-+        group.grid(padx = 10, pady = 5, sticky=(N, S, E, W))
-         def quickFileValidation(s):
-             if s == '': return Pmw.PARTIAL
-             elif os.path.isfile(s): return Pmw.OK
-@@ -955,7 +955,7 @@ protein residues and AMBER charges.  If wish that behavior, simply delete the "p
-         
-         page = self.notebook.add('Temp File Locations')
-         group = Pmw.Group(page,tag_text='Locations')
--        group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
-+        group.grid(padx = 10, pady = 5, sticky=(N, S, E, W))
-         self.pymol_generated_pqr_filename = Pmw.EntryField(group.interior(),
-                                                            labelpos = 'w',
-                                                            label_pyclass = FileDialogButtonClassFactory.get(self.setPymolGeneratedPqrFilename),
-@@ -1003,17 +1003,17 @@ by setting the environment variable TEMP.
-         page = self.notebook.add('Visualization (1)')
-         group = VisualizationGroup(page,tag_text='Visualization',visgroup_num=1)
-         self.visualization_group_1 = group
--        group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
-+        group.grid(padx = 10, pady = 5, sticky=(N, S, E, W))
- 
-         page = self.notebook.add('Visualization (2)')
-         group = VisualizationGroup(page,tag_text='Visualization',visgroup_num=2)
-         self.visualization_group_2 = group
--        group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
-+        group.grid(padx = 10, pady = 5, sticky=(N, S, E, W))
- 
-         # Create a couple of other empty pages
-         page = self.notebook.add('About')
-         group = Pmw.Group(page, tag_text='About PyMOL APBS Tools')
--        group.pack(fill = 'both', expand = 1, padx = 10, pady = 5)
-+        group.grid(padx = 10, pady = 5, sticky=(N, S, E, W))
-         text = """This plugin integrates PyMOL (http://PyMOL.org/) with APBS (http://www.poissonboltzmann.org/apbs/).
- 
- Documentation may be found at
-@@ -2271,7 +2271,7 @@ class VisualizationGroup(Pmw.Group):
-             self.update_buttonbox = Pmw.ButtonBox(self.mm_group.interior(), padx=0)
-             self.update_buttonbox.pack(side=LEFT)
-             self.update_buttonbox.add('Update',command=self.refresh)
--            self.mm_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=TOP)
-+            self.mm_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
- 
-             self.ms_group = Pmw.Group(self.interior(),tag_text='Molecular Surface')
-             self.ms_buttonbox = Pmw.ButtonBox(self.ms_group.interior(), padx=0)
-@@ -2322,7 +2322,7 @@ class VisualizationGroup(Pmw.Group):
-             bars = (self.mol_surf_low,self.mol_surf_middle,self.mol_surf_high)
-             Pmw.alignlabels(bars)
-             for bar in bars: bar.pack(side=LEFT)
--            self.ms_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT)
-+            self.ms_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
- 
-             self.fl_group = Pmw.Group(self.interior(),tag_text='Field Lines')
-             self.fl_buttonbox = Pmw.ButtonBox(self.fl_group.interior(), padx=0)
-@@ -2337,7 +2337,7 @@ class VisualizationGroup(Pmw.Group):
-                                   text = """Follows same coloring as surface.""",
-                                   )
-             label.pack()
--            self.fl_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=TOP)
-+            self.fl_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
- 
-             self.pi_group = Pmw.Group(self.interior(),tag_text='Positive Isosurface')
-             self.pi_buttonbox = Pmw.ButtonBox(self.pi_group.interior(), padx=0)
-@@ -2356,7 +2356,7 @@ class VisualizationGroup(Pmw.Group):
-                                             entryfield_validate = {'validator' : 'real', 'min':0}
-                                             )
-             self.pos_surf_val.pack(side=LEFT)
--            self.pi_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT)
-+            self.pi_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
- 
-             self.ni_group = Pmw.Group(self.interior(),tag_text='Negative Isosurface')
-             self.ni_buttonbox = Pmw.ButtonBox(self.ni_group.interior(), padx=0)
-@@ -2375,7 +2375,7 @@ class VisualizationGroup(Pmw.Group):
-                                             entryfield_validate = {'validator' : 'real', 'max':0}
-                                             )
-             self.neg_surf_val.pack(side=LEFT)
--            self.ni_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT)
-+            self.ni_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W))
- 
- 
- 


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