[gentoo-commits] proj/sci:master commit in: sci-biology/consed2gap/

["Justin Lecher" <jlec@gentoo.org>]

commit:     3ff34c74dc96805669b3a4c656bbf6f618a50b76
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Sep 24 06:29:26 2014 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Sep 24 06:29:26 2014 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3ff34c74

sci-biology/consed2gap: Bump to EAPI=5

Package-Manager: portage-2.2.13

---
 sci-biology/consed2gap/ChangeLog                  |  4 ++++
 sci-biology/consed2gap/consed2gap-20050520.ebuild | 24 +++++++++++------------
 sci-biology/consed2gap/metadata.xml               | 10 +++++-----
 3 files changed, 21 insertions(+), 17 deletions(-)

diff --git a/sci-biology/consed2gap/ChangeLog b/sci-biology/consed2gap/ChangeLog
index ee91ed4..579fb3d 100644
--- a/sci-biology/consed2gap/ChangeLog
+++ b/sci-biology/consed2gap/ChangeLog
@@ -2,6 +2,10 @@
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  24 Sep 2014; Justin Lecher <jlec@gentoo.org> consed2gap-20050520.ebuild,
+  metadata.xml:
+  Bump to EAPI=5
+
 *consed2gap-20050520 (23 Mar 2014)
 
   23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

diff --git a/sci-biology/consed2gap/consed2gap-20050520.ebuild b/sci-biology/consed2gap/consed2gap-20050520.ebuild
index 9a0223f..7a682bc 100644
--- a/sci-biology/consed2gap/consed2gap-20050520.ebuild
+++ b/sci-biology/consed2gap/consed2gap-20050520.ebuild
@@ -2,12 +2,13 @@
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
-EAPI=3
+EAPI=5
+
 inherit perl-module perl-app
 
-DESCRIPTION="convert whole CONSED dataset to a GAP4 project"
+DESCRIPTION="Convert whole CONSED dataset to a GAP4 project"
 HOMEPAGE="http://genome.imb-jena.de/software/consed2gap/"
-SRC_URI="http://genome.imb-jena.de/software/consed2gap/consed2gap.tgz"
+SRC_URI="http://genome.imb-jena.de/software/consed2gap/consed2gap.tgz -> ${P}.tgz"
 
 LICENSE="FLI-Jena"
 SLOT="0"
@@ -16,13 +17,12 @@ IUSE=""
 
 DEPEND=""
 RDEPEND="${DEPEND}
-		dev-lang/perl
-		sci-libs/io_lib
-		sci-biology/caftools
-		sci-biology/align_to_scf"
+	dev-lang/perl:=
+	sci-libs/io_lib
+	sci-biology/caftools
+	sci-biology/align_to_scf"
 
-MY_P="consed2gap"
-S="${WORKDIR}/${MY_P}"
+S="${WORKDIR}/${PN}"
 
 src_prepare(){
 	sed -i 's#/usr/local/bin/perl#/usr/bin/env perl#' bin/phrap2caf || die
@@ -30,9 +30,9 @@ src_prepare(){
 }
 
 src_install(){
-	dobin bin/consed2gap bin/phrap2caf bin/badgerGetOpt.pl || die
-	mkdir -p "${D}"/usr/share/"${PN}" || die
-	cp -r example "${D}"/usr/share/"${PN}" || die
+	dobin bin/consed2gap bin/phrap2caf bin/badgerGetOpt.pl
+	dodir /usr/share/"${PN}"
+	mv example "${ED}"/usr/share/"${PN}"/ || die
 
 	cd bin && perl-module_src_install
 }

diff --git a/sci-biology/consed2gap/metadata.xml b/sci-biology/consed2gap/metadata.xml
index 07b5255..2bc8930 100644
--- a/sci-biology/consed2gap/metadata.xml
+++ b/sci-biology/consed2gap/metadata.xml
@@ -1,9 +1,9 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-	<herd>sci-biology</herd>
-	<maintainer>
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
 </pkgmetadata>