[gentoo-commits] proj/sci:master commit in: sci-biology/manatee-jcvi/

["Christoph Junghans" <ottxor@gentoo.org>]

commit:     b53aea0d3fed2eb6dadf7513bd232a58a871316d
Author:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 16 17:45:16 2014 +0000
Commit:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Tue Sep 16 17:45:16 2014 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b53aea0d

clean up

Package-Manager: portage-2.2.8-r1

---
 sci-biology/manatee-jcvi/ChangeLog                 |  6 +++--
 sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild | 26 +++++++++++-----------
 2 files changed, 17 insertions(+), 15 deletions(-)

diff --git a/sci-biology/manatee-jcvi/ChangeLog b/sci-biology/manatee-jcvi/ChangeLog
index ab9e1df..71bda27 100644
--- a/sci-biology/manatee-jcvi/ChangeLog
+++ b/sci-biology/manatee-jcvi/ChangeLog
@@ -1,11 +1,13 @@
 # ChangeLog for sci-biology/manatee-jcvi
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  16 Sep 2014; Christoph Junghans <ottxor@gentoo.org> manatee-jcvi-2.4.3.ebuild:
+  clean up
+
 *manatee-jcvi-2.4.3 (29 Aug 2013)
 
   29 Aug 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
   +manatee-jcvi-2.4.3.ebuild, +metadata.xml:
   Initial ebuild for the other version of manatee, using different database
   schema.
-

diff --git a/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild b/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild
index c04c5fa..7eec8b2 100644
--- a/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild
+++ b/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild
@@ -2,9 +2,9 @@
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
-EAPI=3
+EAPI=5
 
-DESCRIPTION="A JCVI version of Manatee: a genome annotation tool that can view, modify, and store annotation for prokaryotic and eukaryotic genomes."
+DESCRIPTION="genome annotation tool: view, modify, and store annotation for prokaryotic and eukaryotic genomes."
 HOMEPAGE="http://manatee.sourceforge.net/jcvi/downloads.shtml"
 SRC_URI="http://downloads.sourceforge.net/project/manatee/manatee/manatee-2.4.3/manatee-2.4.3.tgz"
 
@@ -16,9 +16,6 @@ IUSE=""
 
 DEPEND=">=dev-libs/expat-1.95.8
 		>=media-libs/gd-2.0.34
-		dev-perl/CGI
-		dev-perl/CGI-Carp
-		dev-perl/CGI-Cookie
 		dev-perl/DBI
 		dev-perl/DBD-mysql
 		dev-perl/XML-Parser
@@ -27,17 +24,20 @@ DEPEND=">=dev-libs/expat-1.95.8
 		dev-perl/XML-Writer
 		dev-perl/HTML-Template
 		dev-perl/Tree-DAG_Node
-		dev-perl/File-Spec
-		dev-perl/Data-Dumper
+		perl-core/File-Spec
+		perl-core/Data-Dumper
 		dev-perl/GD
-		dev-perl/GD-Text
-		dev-perl/GD-Graph
-		dev-perl/Storable
+		perl-core/Storable
 		dev-perl/Log-Log4perl
 		dev-perl/Log-Cabin
-		dev-perl/Date-Manip
 		dev-perl/IO-Tee
 		dev-perl/MLDBM"
+		#dev-perl/CGI
+		#dev-perl/CGI-Carp
+		#dev-perl/CGI-Cookie
+		#dev-perl/GD-Text
+		#dev-perl/GD-Graph
+		#dev-perl/Date-Manip
 RDEPEND="${DEPEND}
 		>=dev-db/mysql-5.0
 		>=www-servers/apache-2.2"
@@ -45,9 +45,9 @@ RDEPEND="${DEPEND}
 S="${WORKDIR}"/manatee-"${PV}"
 
 src_configure(){
-	econf HTTPD=/usr/sbin/httpd HTTPD_SCRIPT_HOME=/var/www/cgi-bin HTTPD_DOC_HOME=/var/www/htdocs MYSQLD=/usr/sbin/mysqld || die
+	econf HTTPD=/usr/sbin/httpd HTTPD_SCRIPT_HOME=/var/www/cgi-bin HTTPD_DOC_HOME=/var/www/htdocs MYSQLD=/usr/sbin/mysqld
 }
 
 src_compile(){
-	emake || die
+	emake
 }