[gentoo-commits] proj/sci:master commit in: sci-biology/MeV/

[gentoo-commits] proj/sci:master commit in: sci-biology/MeV/

[Martin Mokrejs]

commit:     f5d7b485604351904edba713efb4185b065af284
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 18:31:50 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 18:31:50 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f5d7b485

sci-biology/MeV: a skeleton for a new package, needs help from java team for sure

---
 sci-biology/MeV/MeV-4.8.1.ebuild | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/sci-biology/MeV/MeV-4.8.1.ebuild b/sci-biology/MeV/MeV-4.8.1.ebuild
new file mode 100644
index 0000000..9a80737
--- /dev/null
+++ b/sci-biology/MeV/MeV-4.8.1.ebuild
@@ -0,0 +1,24 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+#MY_PV="${PV/./_/}"
+MY_PV="4_8_1"
+
+inherit java-pkg-2 java-ant-2 eutils
+
+DESCRIPTION="Multiple experiment Viewer for genomic data analysis"
+HOMEPAGE="http://mev-tm4.sourceforge.net"
+SRC_URI="http://downloads.sourceforge.net/project/mev-tm4/mev-tm4/MeV%204.8.1/MeV_4_8_1_r2727_linux.tar.gz"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/"${PN}"_"${MY_PV}"

[gentoo-commits] proj/sci:master commit in: sci-biology/MeV/

[Christoph Junghans]

commit:     79bde5edb6c14ac96550c28d2914fe3b9d5e5707
Author:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 16 00:19:03 2014 +0000
Commit:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Tue Sep 16 00:26:07 2014 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=79bde5ed

added metadata.xml

Package-Manager: portage-2.2.8-r1

---
 sci-biology/MeV/ChangeLog        | 7 +++++++
 sci-biology/MeV/MeV-4.8.1.ebuild | 2 +-
 sci-biology/MeV/metadata.xml     | 8 ++++++++
 3 files changed, 16 insertions(+), 1 deletion(-)

diff --git a/sci-biology/MeV/ChangeLog b/sci-biology/MeV/ChangeLog
new file mode 100644
index 0000000..5d9b8a5
--- /dev/null
+++ b/sci-biology/MeV/ChangeLog
@@ -0,0 +1,7 @@
+# ChangeLog for sci-biology/MeV
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  16 Sep 2014; Christoph Junghans <ottxor@gentoo.org> +metadata.xml,
+  MeV-4.8.1.ebuild:
+  added metadata.xml

diff --git a/sci-biology/MeV/MeV-4.8.1.ebuild b/sci-biology/MeV/MeV-4.8.1.ebuild
index 9a80737..0b2065b 100644
--- a/sci-biology/MeV/MeV-4.8.1.ebuild
+++ b/sci-biology/MeV/MeV-4.8.1.ebuild
@@ -13,7 +13,7 @@ DESCRIPTION="Multiple experiment Viewer for genomic data analysis"
 HOMEPAGE="http://mev-tm4.sourceforge.net"
 SRC_URI="http://downloads.sourceforge.net/project/mev-tm4/mev-tm4/MeV%204.8.1/MeV_4_8_1_r2727_linux.tar.gz"
 
-LICENSE=""
+LICENSE="Artistic-2"
 SLOT="0"
 KEYWORDS=""
 IUSE=""

diff --git a/sci-biology/MeV/metadata.xml b/sci-biology/MeV/metadata.xml
new file mode 100644
index 0000000..91ee05e
--- /dev/null
+++ b/sci-biology/MeV/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci-biology</herd>
+<maintainer>
+  <email>mmokrejs@fold.natur.cuni.cz</email>
+</maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/MeV/

[Martin Mokrejs]

commit:     5c526c1f9d937ac9c4ff8da7858f2043e1cbd624
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Nov  8 23:02:05 2016 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Nov  8 23:02:05 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=5c526c1f

sci-biology/MeV: record java deps properly

Package-Manager: portage-2.3.0

 sci-biology/MeV/MeV-4.8.1.ebuild | 11 ++++++++---
 1 file changed, 8 insertions(+), 3 deletions(-)

diff --git a/sci-biology/MeV/MeV-4.8.1.ebuild b/sci-biology/MeV/MeV-4.8.1.ebuild
index 9877d28..356bb35 100644
--- a/sci-biology/MeV/MeV-4.8.1.ebuild
+++ b/sci-biology/MeV/MeV-4.8.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
@@ -11,7 +11,7 @@ inherit java-pkg-2 java-ant-2 eutils
 
 DESCRIPTION="Multiple experiment Viewer for genomic data analysis"
 HOMEPAGE="http://mev-tm4.sourceforge.net"
-SRC_URI="http://downloads.sourceforge.net/project/mev-tm4/mev-tm4/MeV%204.8.1/MeV_4_8_1_r2727_linux.tar.gz"
+SRC_URI="http://downloads.sourceforge.net/project/mev-tm4/mev-tm4/MeV%20${PV}/MeV_${MY_PV}_r2727_linux.tar.gz"
 
 LICENSE="Artistic-2"
 SLOT="0"
@@ -19,6 +19,11 @@ KEYWORDS=""
 IUSE=""
 
 DEPEND=""
-RDEPEND="${DEPEND}"
+RDEPEND=">=virtual/jre-1.5:*
+	${DEPEND}"
+DEPEND="${RDEPEND}
+		>=virtual/jdk-1.5:*
+		dev-java/ant-core
+		"
 
 S="${WORKDIR}"/"${PN}"_"${MY_PV}"

[gentoo-commits] proj/sci:master commit in: sci-biology/MeV/

[Horea Christian]

commit:     1094440e3858ef7da817c0a54af34a3febfcd6a5
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Mon May  8 16:55:02 2023 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Mon May  8 16:55:02 2023 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=1094440e

sci-biology/MeV: update upstream metadata

Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/MeV/metadata.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-biology/MeV/metadata.xml b/sci-biology/MeV/metadata.xml
index bd7adb92f..334d55097 100644
--- a/sci-biology/MeV/metadata.xml
+++ b/sci-biology/MeV/metadata.xml
@@ -9,6 +9,6 @@
 		<name>Gentoo Biology Project</name>
 	</maintainer>
 	<upstream>
-		<remote-id type="sourceforge">downloads</remote-id>
+		<remote-id type="sourceforge">mev-tm4</remote-id>
 	</upstream>
 </pkgmetadata>