From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 734BB13877A for ; Fri, 4 Jul 2014 13:42:32 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 419D9E0821; Fri, 4 Jul 2014 13:42:31 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id B2A28E0821 for ; Fri, 4 Jul 2014 13:42:30 +0000 (UTC) Received: from spoonbill.gentoo.org (spoonbill.gentoo.org [81.93.255.5]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 58B2133FFC3 for ; Fri, 4 Jul 2014 13:42:29 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by spoonbill.gentoo.org (Postfix) with ESMTP id ABF15193E5 for ; Fri, 4 Jul 2014 13:42:27 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1404481282.76473186d32683782345c0271a225416c49e7d27.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/Atlas-Link/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild sci-biology/Atlas-Link/ChangeLog sci-biology/Atlas-Link/metadata.xml X-VCS-Directories: sci-biology/Atlas-Link/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 76473186d32683782345c0271a225416c49e7d27 X-VCS-Branch: master Date: Fri, 4 Jul 2014 13:42:27 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: a78b3156-1748-4e52-9d31-f94a981908ee X-Archives-Hash: c41ea6d636aca1eff29278fef7814546 commit: 76473186d32683782345c0271a225416c49e7d27 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Fri Jul 4 13:41:22 2014 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Fri Jul 4 13:41:22 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=76473186 sci-biology/Atlas-Link: noted dependence, see bug #516366 --- sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild | 26 ++++++++++++++++++++++++++ sci-biology/Atlas-Link/ChangeLog | 10 ++++++++++ sci-biology/Atlas-Link/metadata.xml | 9 +++++++++ 3 files changed, 45 insertions(+) diff --git a/sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild b/sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild new file mode 100644 index 0000000..bb15e64 --- /dev/null +++ b/sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild @@ -0,0 +1,26 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit perl-module + +DESCRIPTION="Links and orients genome sequence contigs using mate-pair information or superscaffolds .agp files" +HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-link" +SRC_URI="https://www.hgsc.bcm.edu/sites/default/files/software/Atlas_Link/Atlas-link.tar.gz" + +LICENSE="HGSC-BCM" +SLOT="0" +KEYWORDS="" +IUSE="" + +# https://github.com/gitpan/Algorithm-ClusterPoints +DEPEND="dev-lang/perl + dev-perl/Graph + dev-perl/Algorithm-ClusterPoints + dev-perl/XML-DOM + dev-perl/Statistics-Descriptive" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/Atlas-link diff --git a/sci-biology/Atlas-Link/ChangeLog b/sci-biology/Atlas-Link/ChangeLog new file mode 100644 index 0000000..cb92c11 --- /dev/null +++ b/sci-biology/Atlas-Link/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/Atlas-Link +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*Atlas-Link-0.01 (04 Jul 2014) + + 04 Jul 2014; Martin Mokrejs + +Atlas-Link-0.01.ebuild, +metadata.xml: + sci-biology/Atlas-Link: noted dependence, see bug #516366 + diff --git a/sci-biology/Atlas-Link/metadata.xml b/sci-biology/Atlas-Link/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/Atlas-Link/metadata.xml @@ -0,0 +1,9 @@ + + + + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + +