From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/Atlas-Link/
Date: Fri, 4 Jul 2014 13:42:27 +0000 (UTC) [thread overview]
Message-ID: <1404481282.76473186d32683782345c0271a225416c49e7d27.mmokrejs@gentoo> (raw)
commit: 76473186d32683782345c0271a225416c49e7d27
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Jul 4 13:41:22 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Jul 4 13:41:22 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=76473186
sci-biology/Atlas-Link: noted dependence, see bug #516366
---
sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild | 26 ++++++++++++++++++++++++++
sci-biology/Atlas-Link/ChangeLog | 10 ++++++++++
sci-biology/Atlas-Link/metadata.xml | 9 +++++++++
3 files changed, 45 insertions(+)
diff --git a/sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild b/sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild
new file mode 100644
index 0000000..bb15e64
--- /dev/null
+++ b/sci-biology/Atlas-Link/Atlas-Link-0.01.ebuild
@@ -0,0 +1,26 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit perl-module
+
+DESCRIPTION="Links and orients genome sequence contigs using mate-pair information or superscaffolds .agp files"
+HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-link"
+SRC_URI="https://www.hgsc.bcm.edu/sites/default/files/software/Atlas_Link/Atlas-link.tar.gz"
+
+LICENSE="HGSC-BCM"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+# https://github.com/gitpan/Algorithm-ClusterPoints
+DEPEND="dev-lang/perl
+ dev-perl/Graph
+ dev-perl/Algorithm-ClusterPoints
+ dev-perl/XML-DOM
+ dev-perl/Statistics-Descriptive"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/Atlas-link
diff --git a/sci-biology/Atlas-Link/ChangeLog b/sci-biology/Atlas-Link/ChangeLog
new file mode 100644
index 0000000..cb92c11
--- /dev/null
+++ b/sci-biology/Atlas-Link/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/Atlas-Link
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*Atlas-Link-0.01 (04 Jul 2014)
+
+ 04 Jul 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +Atlas-Link-0.01.ebuild, +metadata.xml:
+ sci-biology/Atlas-Link: noted dependence, see bug #516366
+
diff --git a/sci-biology/Atlas-Link/metadata.xml b/sci-biology/Atlas-Link/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/Atlas-Link/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
next reply other threads:[~2014-07-04 13:42 UTC|newest]
Thread overview: 3+ messages / expand[flat|nested] mbox.gz Atom feed top
2014-07-04 13:42 Martin Mokrejs [this message]
-- strict thread matches above, loose matches on Subject: below --
2016-02-26 9:46 [gentoo-commits] proj/sci:master commit in: sci-biology/Atlas-Link/ Justin Lecher
2020-09-27 22:43 Horea Christian
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