From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 17F5B1393E9 for ; Tue, 3 Jun 2014 07:06:39 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 9391FE091D; Tue, 3 Jun 2014 07:06:38 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 02111E091D for ; Tue, 3 Jun 2014 07:06:37 +0000 (UTC) Received: from spoonbill.gentoo.org (spoonbill.gentoo.org [81.93.255.5]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id EE0E733FE28 for ; Tue, 3 Jun 2014 07:06:36 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by spoonbill.gentoo.org (Postfix) with ESMTP id 7D9C8182D5 for ; Tue, 3 Jun 2014 07:06:35 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1401779185.b65cb3eec74d50842909ac65d6e0d156e1a4e910.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/biopython/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/biopython/ChangeLog sci-biology/biopython/biopython-1.63-r2.ebuild sci-biology/biopython/biopython-1.64.ebuild sci-biology/biopython/metadata.xml X-VCS-Directories: sci-biology/biopython/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: b65cb3eec74d50842909ac65d6e0d156e1a4e910 X-VCS-Branch: master Date: Tue, 3 Jun 2014 07:06:35 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 020c602a-ad0c-4759-bb95-344229d64182 X-Archives-Hash: 0e4d9c199fe7e61c65c1d9aeab6aff72 commit: b65cb3eec74d50842909ac65d6e0d156e1a4e910 Author: Justin Lecher gentoo org> AuthorDate: Tue Jun 3 07:06:25 2014 +0000 Commit: Justin Lecher gentoo org> CommitDate: Tue Jun 3 07:06:25 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b65cb3ee Moved to tree Signed-off-by: Justin Lecher gentoo.org> --- sci-biology/biopython/ChangeLog | 10 ----- sci-biology/biopython/biopython-1.63-r2.ebuild | 54 -------------------------- sci-biology/biopython/biopython-1.64.ebuild | 54 -------------------------- sci-biology/biopython/metadata.xml | 5 --- 4 files changed, 123 deletions(-) diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog deleted file mode 100644 index c60a939..0000000 --- a/sci-biology/biopython/ChangeLog +++ /dev/null @@ -1,10 +0,0 @@ -# ChangeLog for sci-biology/biopython -# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: $ - -*biopython-1.63-r2 (03 Jun 2014) -*biopython-1.64 (03 Jun 2014) - - 03 Jun 2014; Martin Mokrejs - +biopython-1.63-r2.ebuild, +biopython-1.64.ebuild, +metadata.xml: - sci-biology/biopython-1.64: version bump with some notable bugfixes diff --git a/sci-biology/biopython/biopython-1.63-r2.ebuild b/sci-biology/biopython/biopython-1.63-r2.ebuild deleted file mode 100644 index 435c757..0000000 --- a/sci-biology/biopython/biopython-1.63-r2.ebuild +++ /dev/null @@ -1,54 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.62.ebuild,v 1.1 2013/09/17 16:07:56 jlec Exp $ - -EAPI=5 - -PYTHON_COMPAT=( python{2_6,2_7} ) - -inherit distutils-r1 eutils - -DESCRIPTION="Python modules for computational molecular biology" -HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/" -SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz" - -LICENSE="HPND" -SLOT="0" -KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" -IUSE="mysql postgres" - -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND="${PYTHON_DEPS} - dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/rdflib[${PYTHON_USEDEP}] - dev-python/pygraphviz[${PYTHON_USEDEP}] - dev-python/reportlab[${PYTHON_USEDEP}] - media-gfx/pydot[${PYTHON_USEDEP}] - mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] ) - postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )" -DEPEND="${RDEPEND} - sys-devel/flex" - -DOCS=( CONTRIB DEPRECATED NEWS README Doc/. ) - -src_prepare() { - epatch "${FILESDIR}/SffIO_error_in_check_eof.patch" - epatch "${FILESDIR}/SffIO_broken_padding.patch" - epatch "${FILESDIR}/SffIO-crossed-trimpoints.patch" - distutils-r1_src_prepare -} - -python_test() { - cd Tests || die - ${PYTHON} run_tests.py || die -} - -python_install_all() { - distutils-r1_python_install_all - - dodir /usr/share/${PN} - cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die -} diff --git a/sci-biology/biopython/biopython-1.64.ebuild b/sci-biology/biopython/biopython-1.64.ebuild deleted file mode 100644 index 366fa7a..0000000 --- a/sci-biology/biopython/biopython-1.64.ebuild +++ /dev/null @@ -1,54 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.62.ebuild,v 1.1 2013/09/17 16:07:56 jlec Exp $ - -EAPI=5 - -PYTHON_COMPAT=( python{2_6,2_7} ) - -inherit distutils-r1 eutils - -DESCRIPTION="Python modules for computational molecular biology" -HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/" -SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz" - -LICENSE="HPND" -SLOT="0" -KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" -IUSE="mysql postgres" - -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND="${PYTHON_DEPS} - dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/rdflib[${PYTHON_USEDEP}] - dev-python/pygraphviz[${PYTHON_USEDEP}] - dev-python/reportlab[${PYTHON_USEDEP}] - media-gfx/pydot[${PYTHON_USEDEP}] - mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] ) - postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )" -DEPEND="${RDEPEND} - sys-devel/flex" - -DOCS=( CONTRIB DEPRECATED NEWS README Doc/. ) - -#src_prepare() { -# epatch "${FILESDIR}/SffIO_error_in_check_eof.patch" -# epatch "${FILESDIR}/SffIO_broken_padding.patch" -# epatch "${FILESDIR}/SffIO-crossed-trimpoints.patch" -# distutils-r1_src_prepare -#} - -python_test() { - cd Tests || die - ${PYTHON} run_tests.py || die -} - -python_install_all() { - distutils-r1_python_install_all - - dodir /usr/share/${PN} - cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die -} diff --git a/sci-biology/biopython/metadata.xml b/sci-biology/biopython/metadata.xml deleted file mode 100644 index f17a827..0000000 --- a/sci-biology/biopython/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ - - - - sci-biology -