* [gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/
2013-06-18 8:54 [gentoo-commits] proj/sci:fixing " Justin Lecher
@ 2013-06-18 8:56 ` Justin Lecher
0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2013-06-18 8:56 UTC (permalink / raw
To: gentoo-commits
commit: 1181076dda88bff9cba8aa1432fdcaa5a14ba144
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 18 08:44:19 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 18 08:44:19 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1181076d
sci-chemistry/talosn: New package
Package-Manager: portage-2.2.0_alpha180
---
sci-chemistry/talosn/ChangeLog | 10 ++++
sci-chemistry/talosn/metadata.xml | 5 ++
.../talosn/talosn-4.01.2013.148.15.55.ebuild | 59 ++++++++++++++++++++++
3 files changed, 74 insertions(+)
diff --git a/sci-chemistry/talosn/ChangeLog b/sci-chemistry/talosn/ChangeLog
new file mode 100644
index 0000000..dea3c84
--- /dev/null
+++ b/sci-chemistry/talosn/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/talosn
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*talosn-4.01.2013.148.15.55 (18 Jun 2013)
+
+ 18 Jun 2013; Justin Lecher <jlec@gentoo.org>
+ +talosn-4.01.2013.148.15.55.ebuild, +metadata.xml:
+ New package
+
diff --git a/sci-chemistry/talosn/metadata.xml b/sci-chemistry/talosn/metadata.xml
new file mode 100644
index 0000000..51fdeda
--- /dev/null
+++ b/sci-chemistry/talosn/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-chemistry</herd>
+</pkgmetadata>
diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
new file mode 100644
index 0000000..ac569c3
--- /dev/null
+++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
@@ -0,0 +1,59 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit java-pkg-opt-2
+
+DESCRIPTION="Prediction of Protein Backbone and Sidechain Torsion Angles from NMR Chemical Shifts"
+HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"
+SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
+
+SLOT="0"
+LICENSE="all-rights-reserved"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+RDEPEND=">=virtual/jre-1.5"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"
+
+QA_PREBUILT="/opt/.*"
+
+src_prepare() {
+ local s64
+ use amd64 || s64="_x64"
+ rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
+}
+
+src_install() {
+ local TALOSN="/opt/${PN}"
+ exeinto ${TALOSN}/bin
+ doexe bin/*
+
+ exeinto ${TALOSN}/com
+ doexe com/*
+
+ exeinto /opt/bin
+ doexe talosn{,_ss}
+
+ insinto ${TALOSN}
+ doins -r tab
+
+ java-pkg_jarinto ${TALOSN}
+ java-pkg_dojar rama.jar
+
+ java-pkg_dolauncher jrama --jar rama.jar -into /opt/
+
+ if use examples; then
+ insinto /usr/share/${PN}
+ doins -r demo
+ fi
+
+ cat >> "${T}"/40talosn <<- EOF
+ TALOSN_DIR="${EPREFIX}/${TALOSN}"
+ EOF
+ doenvd "${T}"/40talosn
+}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/
@ 2013-06-18 9:07 Justin Lecher
0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2013-06-18 9:07 UTC (permalink / raw
To: gentoo-commits
commit: 49368d48095f653b5edef0fb863d5b5e70c0a2d1
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 18 08:44:19 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 18 09:05:22 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=49368d48
sci-chemistry/talosn: New package
Package-Manager: portage-2.2.0_alpha180
---
sci-chemistry/talosn/ChangeLog | 10 ++++
sci-chemistry/talosn/metadata.xml | 5 ++
.../talosn/talosn-4.01.2013.148.15.55.ebuild | 59 ++++++++++++++++++++++
3 files changed, 74 insertions(+)
diff --git a/sci-chemistry/talosn/ChangeLog b/sci-chemistry/talosn/ChangeLog
new file mode 100644
index 0000000..dea3c84
--- /dev/null
+++ b/sci-chemistry/talosn/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/talosn
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*talosn-4.01.2013.148.15.55 (18 Jun 2013)
+
+ 18 Jun 2013; Justin Lecher <jlec@gentoo.org>
+ +talosn-4.01.2013.148.15.55.ebuild, +metadata.xml:
+ New package
+
diff --git a/sci-chemistry/talosn/metadata.xml b/sci-chemistry/talosn/metadata.xml
new file mode 100644
index 0000000..51fdeda
--- /dev/null
+++ b/sci-chemistry/talosn/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-chemistry</herd>
+</pkgmetadata>
diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
new file mode 100644
index 0000000..ac569c3
--- /dev/null
+++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
@@ -0,0 +1,59 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit java-pkg-opt-2
+
+DESCRIPTION="Prediction of Protein Backbone and Sidechain Torsion Angles from NMR Chemical Shifts"
+HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"
+SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
+
+SLOT="0"
+LICENSE="all-rights-reserved"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+RDEPEND=">=virtual/jre-1.5"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"
+
+QA_PREBUILT="/opt/.*"
+
+src_prepare() {
+ local s64
+ use amd64 || s64="_x64"
+ rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
+}
+
+src_install() {
+ local TALOSN="/opt/${PN}"
+ exeinto ${TALOSN}/bin
+ doexe bin/*
+
+ exeinto ${TALOSN}/com
+ doexe com/*
+
+ exeinto /opt/bin
+ doexe talosn{,_ss}
+
+ insinto ${TALOSN}
+ doins -r tab
+
+ java-pkg_jarinto ${TALOSN}
+ java-pkg_dojar rama.jar
+
+ java-pkg_dolauncher jrama --jar rama.jar -into /opt/
+
+ if use examples; then
+ insinto /usr/share/${PN}
+ doins -r demo
+ fi
+
+ cat >> "${T}"/40talosn <<- EOF
+ TALOSN_DIR="${EPREFIX}/${TALOSN}"
+ EOF
+ doenvd "${T}"/40talosn
+}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/
@ 2013-06-18 13:36 Justin Lecher
0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2013-06-18 13:36 UTC (permalink / raw
To: gentoo-commits
commit: 9d212698b5fd45e8eb6af316de16c741c8a73de5
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 18 13:36:29 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 18 13:36:29 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9d212698
sci-chemistry/talosn: drop upstream path in favour of our
Package-Manager: portage-2.2.0_alpha180
---
sci-chemistry/talosn/ChangeLog | 6 ++++++
...48.15.55.ebuild => talosn-4.01.2013.148.15.55-r2.ebuild} | 13 +++++++++++--
2 files changed, 17 insertions(+), 2 deletions(-)
diff --git a/sci-chemistry/talosn/ChangeLog b/sci-chemistry/talosn/ChangeLog
index dea3c84..9d358bf 100644
--- a/sci-chemistry/talosn/ChangeLog
+++ b/sci-chemistry/talosn/ChangeLog
@@ -2,6 +2,12 @@
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+*talosn-4.01.2013.148.15.55-r2 (18 Jun 2013)
+
+ 18 Jun 2013; Justin Lecher <jlec@gentoo.org>
+ -talosn-4.01.2013.148.15.55.ebuild, +talosn-4.01.2013.148.15.55-r2.ebuild:
+ drop upstream path in favour of our
+
*talosn-4.01.2013.148.15.55 (18 Jun 2013)
18 Jun 2013; Justin Lecher <jlec@gentoo.org>
diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild
similarity index 80%
rename from sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
rename to sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild
index ac569c3..648c342 100644
--- a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55.ebuild
+++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild
@@ -15,8 +15,10 @@ LICENSE="all-rights-reserved"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="examples"
-RDEPEND=">=virtual/jre-1.5"
-DEPEND="${RDEPEND}"
+DEPEND=">=virtual/jre-1.5"
+RDEPEND="${DEPEND}
+ app-shells/tcsh
+ sci-biology/ncbi-tools"
S="${WORKDIR}"
@@ -26,6 +28,12 @@ src_prepare() {
local s64
use amd64 || s64="_x64"
rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
+
+ sed \
+ -e '/setenv TALOSN_DIR/d' \
+ -e "/set BLAST/s:=.*:= \"${EPREFIX}/usr/bin/blastpgp\":g" \
+ -e '/set NR_DBNAME/s:=.*:= ${BLASTDB}:g' \
+ -i talosn_ss || die
}
src_install() {
@@ -54,6 +62,7 @@ src_install() {
cat >> "${T}"/40talosn <<- EOF
TALOSN_DIR="${EPREFIX}/${TALOSN}"
+ #BLASTDB=
EOF
doenvd "${T}"/40talosn
}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/
@ 2014-04-25 14:32 Justin Lecher
0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2014-04-25 14:32 UTC (permalink / raw
To: gentoo-commits
commit: 2baf8779cbeb05c642d0f64b059edcf4d0086a84
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Apr 24 08:30:52 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Apr 25 08:22:52 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2baf8779
sci-chemistry/talosn: Bump due to upstream tarball change
Package-Manager: portage-2.2.10
---
sci-chemistry/talosn/ChangeLog | 6 +++++-
...013.148.15.55-r2.ebuild => talosn-4.01.2013.148.15.55-r3.ebuild} | 0
2 files changed, 5 insertions(+), 1 deletion(-)
diff --git a/sci-chemistry/talosn/ChangeLog b/sci-chemistry/talosn/ChangeLog
index 9d358bf..21425b7 100644
--- a/sci-chemistry/talosn/ChangeLog
+++ b/sci-chemistry/talosn/ChangeLog
@@ -1,7 +1,11 @@
# ChangeLog for sci-chemistry/talosn
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 24 Apr 2014; Justin Lecher <jlec@gentoo.org>
+ +talosn-4.01.2013.148.15.55-r3.ebuild:
+ Bump due to upstream tarball change
+
*talosn-4.01.2013.148.15.55-r2 (18 Jun 2013)
18 Jun 2013; Justin Lecher <jlec@gentoo.org>
diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild
similarity index 100%
rename from sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r2.ebuild
rename to sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/
@ 2015-09-21 17:44 Justin Lecher
0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2015-09-21 17:44 UTC (permalink / raw
To: gentoo-commits
commit: b4f54a66f2201a5b4d96d6ef427f01cf556316b5
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 21 17:34:01 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Sep 21 17:34:01 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b4f54a66
sci-chemistry/talosn: Add subslot operators
Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild
index 827f37d..f28e0fb 100644
--- a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild
+++ b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -15,7 +15,7 @@ LICENSE="all-rights-reserved"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="examples"
-DEPEND=">=virtual/jre-1.5"
+DEPEND=">=virtual/jre-1.5:*"
RDEPEND="${DEPEND}
app-shells/tcsh
sci-biology/ncbi-tools"
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/
@ 2015-10-23 11:01 Justin Lecher
0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2015-10-23 11:01 UTC (permalink / raw
To: gentoo-commits
commit: b1a4cd1ee04901d7a7b590ef1abcd4475782f8c2
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Oct 23 11:00:54 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Oct 23 11:00:54 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=b1a4cd1e
sci-chemistry/talosn: Version Bump
Package-Manager: portage-2.2.23
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
.../talosn/talosn-4.12.2015.147.15.40.ebuild | 68 ++++++++++++++++++++++
1 file changed, 68 insertions(+)
diff --git a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild
new file mode 100644
index 0000000..f28e0fb
--- /dev/null
+++ b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild
@@ -0,0 +1,68 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit java-pkg-opt-2
+
+DESCRIPTION="Prediction of Protein Backbone and Sidechain Torsion Angles from NMR Chemical Shifts"
+HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"
+SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
+
+SLOT="0"
+LICENSE="all-rights-reserved"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+DEPEND=">=virtual/jre-1.5:*"
+RDEPEND="${DEPEND}
+ app-shells/tcsh
+ sci-biology/ncbi-tools"
+
+S="${WORKDIR}"
+
+QA_PREBUILT="/opt/.*"
+
+src_prepare() {
+ local s64
+ use amd64 || s64="_x64"
+ rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
+
+ sed \
+ -e '/setenv TALOSN_DIR/d' \
+ -e "/set BLAST/s:=.*:= \"${EPREFIX}/usr/bin/blastpgp\":g" \
+ -e '/set NR_DBNAME/s:=.*:= ${BLASTDB}:g' \
+ -i talosn_ss || die
+}
+
+src_install() {
+ local TALOSN="/opt/${PN}"
+ exeinto ${TALOSN}/bin
+ doexe bin/*
+
+ exeinto ${TALOSN}/com
+ doexe com/*
+
+ exeinto /opt/bin
+ doexe talosn{,_ss}
+
+ insinto ${TALOSN}
+ doins -r tab
+
+ java-pkg_jarinto ${TALOSN}
+ java-pkg_dojar rama.jar
+
+ java-pkg_dolauncher jrama --jar rama.jar -into /opt/
+
+ if use examples; then
+ insinto /usr/share/${PN}
+ doins -r demo
+ fi
+
+ cat >> "${T}"/40talosn <<- EOF
+ TALOSN_DIR="${EPREFIX}/${TALOSN}"
+ #BLASTDB=
+ EOF
+ doenvd "${T}"/40talosn
+}
^ permalink raw reply related [flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/
@ 2021-01-18 11:33 Andrew Ammerlaan
0 siblings, 0 replies; 7+ messages in thread
From: Andrew Ammerlaan @ 2021-01-18 11:33 UTC (permalink / raw
To: gentoo-commits
commit: ef081ac76fedf3af034da77298fcc1b541e2c5ec
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Mon Jan 18 11:33:07 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Mon Jan 18 11:33:07 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ef081ac7
sci-chemistry/talosn: fix fetch
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
.../talosn/talosn-4.01.2013.148.15.55-r3.ebuild | 67 ----------------------
.../talosn/talosn-4.12.2015.147.15.40.ebuild | 9 +--
2 files changed, 5 insertions(+), 71 deletions(-)
diff --git a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild b/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild
deleted file mode 100644
index d308ded66..000000000
--- a/sci-chemistry/talosn/talosn-4.01.2013.148.15.55-r3.ebuild
+++ /dev/null
@@ -1,67 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit java-pkg-opt-2
-
-DESCRIPTION="Prediction of Protein bb and sc Torsion Angles from NMR Chemical Shifts"
-HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"
-SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
-
-SLOT="0"
-LICENSE="all-rights-reserved"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="examples"
-
-DEPEND=">=virtual/jre-1.5:*"
-RDEPEND="${DEPEND}
- app-shells/tcsh
- sci-biology/ncbi-tools"
-
-S="${WORKDIR}"
-
-QA_PREBUILT="/opt/.*"
-
-src_prepare() {
- local s64
- use amd64 || s64="_x64"
- rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
-
- sed \
- -e '/setenv TALOSN_DIR/d' \
- -e "/set BLAST/s:=.*:= \"${EPREFIX}/usr/bin/blastpgp\":g" \
- -e '/set NR_DBNAME/s:=.*:= ${BLASTDB}:g' \
- -i talosn_ss || die
-}
-
-src_install() {
- local TALOSN="/opt/${PN}"
- exeinto ${TALOSN}/bin
- doexe bin/*
-
- exeinto ${TALOSN}/com
- doexe com/*
-
- exeinto /opt/bin
- doexe talosn{,_ss}
-
- insinto ${TALOSN}
- doins -r tab
-
- java-pkg_jarinto ${TALOSN}
- java-pkg_dojar rama.jar
-
- java-pkg_dolauncher jrama --jar rama.jar -into /opt/
-
- if use examples; then
- insinto /usr/share/${PN}
- doins -r demo
- fi
-
- cat >> "${T}"/40talosn <<- EOF
- TALOSN_DIR="${EPREFIX}/${TALOSN}"
- #BLASTDB=
- EOF
- doenvd "${T}"/40talosn
-}
diff --git a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild
index d308ded66..1fbcea875 100644
--- a/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild
+++ b/sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild
@@ -1,13 +1,13 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
inherit java-pkg-opt-2
DESCRIPTION="Prediction of Protein bb and sc Torsion Angles from NMR Chemical Shifts"
-HOMEPAGE="http://spin.niddk.nih.gov/bax/software/TALOS-N/"
-SRC_URI="http://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
+HOMEPAGE="https://spin.niddk.nih.gov/bax/software/TALOS-N/"
+SRC_URI="https://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
SLOT="0"
LICENSE="all-rights-reserved"
@@ -24,6 +24,7 @@ S="${WORKDIR}"
QA_PREBUILT="/opt/.*"
src_prepare() {
+ default
local s64
use amd64 || s64="_x64"
rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
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2014-04-25 14:32 [gentoo-commits] proj/sci:master commit in: sci-chemistry/talosn/ Justin Lecher
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2013-06-18 9:07 Justin Lecher
2013-06-18 8:54 [gentoo-commits] proj/sci:fixing " Justin Lecher
2013-06-18 8:56 ` [gentoo-commits] proj/sci:master " Justin Lecher
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