From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id B548F138A1F for ; Tue, 15 Apr 2014 09:08:15 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 8F526E0A45; Tue, 15 Apr 2014 09:08:14 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 2E213E0A45 for ; Tue, 15 Apr 2014 09:08:13 +0000 (UTC) Received: from spoonbill.gentoo.org (spoonbill.gentoo.org [81.93.255.5]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 9F755340051 for ; Tue, 15 Apr 2014 09:08:12 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by spoonbill.gentoo.org (Postfix) with ESMTP id 4DEC218163 for ; Tue, 15 Apr 2014 09:08:11 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1397552773.6662c1697f2b8a3ca44c0f5e72cdafff5da4d7b8.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/velvetk/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/velvetk/ChangeLog sci-biology/velvetk/metadata.xml sci-biology/velvetk/velvetk-20120606.ebuild X-VCS-Directories: sci-biology/velvetk/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 6662c1697f2b8a3ca44c0f5e72cdafff5da4d7b8 X-VCS-Branch: master Date: Tue, 15 Apr 2014 09:08:11 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: bf4fd883-0ab1-40fa-a6d1-8f812f42d0ad X-Archives-Hash: ae37f3e441cfb79036a453e37ace230c commit: 6662c1697f2b8a3ca44c0f5e72cdafff5da4d7b8 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Tue Apr 15 09:06:13 2014 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Tue Apr 15 09:06:13 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=6662c169 sci-biology/velvetk: new package Package-Manager: portage-2.2.7 --- sci-biology/velvetk/ChangeLog | 9 +++++++++ sci-biology/velvetk/metadata.xml | 9 +++++++++ sci-biology/velvetk/velvetk-20120606.ebuild | 29 +++++++++++++++++++++++++++++ 3 files changed, 47 insertions(+) diff --git a/sci-biology/velvetk/ChangeLog b/sci-biology/velvetk/ChangeLog new file mode 100644 index 0000000..add4df7 --- /dev/null +++ b/sci-biology/velvetk/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/velvetk +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*velvetk-20120606 (15 Apr 2014) + + 15 Apr 2014; Martin Mokrejs +metadata.xml, + +velvetk-20120606.ebuild: + sci-biology/velvetk: new package diff --git a/sci-biology/velvetk/metadata.xml b/sci-biology/velvetk/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/velvetk/metadata.xml @@ -0,0 +1,9 @@ + + + + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + + diff --git a/sci-biology/velvetk/velvetk-20120606.ebuild b/sci-biology/velvetk/velvetk-20120606.ebuild new file mode 100644 index 0000000..2ebb4f3 --- /dev/null +++ b/sci-biology/velvetk/velvetk-20120606.ebuild @@ -0,0 +1,29 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit perl-module + +DESCRIPTION="Estimate the best k-mer size to use for your Velvet de novo assembly" +HOMEPAGE="http://www.vicbioinformatics.com/software.velvetk.shtml" +SRC_URI="http://www.vicbioinformatics.com/velvetk.pl" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND="" +RDEPEND="${DEPEND}" + +S="${WORKDIR}" + +src_prepare(){ + cp -p "${DISTDIR}"/velvetk.pl . || die +} + +src_install(){ + dobin velvetk.pl +}