[gentoo-commits] proj/sci:master commit in: sci-biology/velvetk/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     6662c1697f2b8a3ca44c0f5e72cdafff5da4d7b8
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Apr 15 09:06:13 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Apr 15 09:06:13 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=6662c169

sci-biology/velvetk: new package

Package-Manager: portage-2.2.7

---
 sci-biology/velvetk/ChangeLog               |  9 +++++++++
 sci-biology/velvetk/metadata.xml            |  9 +++++++++
 sci-biology/velvetk/velvetk-20120606.ebuild | 29 +++++++++++++++++++++++++++++
 3 files changed, 47 insertions(+)

diff --git a/sci-biology/velvetk/ChangeLog b/sci-biology/velvetk/ChangeLog
new file mode 100644
index 0000000..add4df7
--- /dev/null
+++ b/sci-biology/velvetk/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/velvetk
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*velvetk-20120606 (15 Apr 2014)
+
+  15 Apr 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
+  +velvetk-20120606.ebuild:
+  sci-biology/velvetk: new package

diff --git a/sci-biology/velvetk/metadata.xml b/sci-biology/velvetk/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/velvetk/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/sci-biology/velvetk/velvetk-20120606.ebuild b/sci-biology/velvetk/velvetk-20120606.ebuild
new file mode 100644
index 0000000..2ebb4f3
--- /dev/null
+++ b/sci-biology/velvetk/velvetk-20120606.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit perl-module
+
+DESCRIPTION="Estimate the best k-mer size to use for your Velvet de novo assembly"
+HOMEPAGE="http://www.vicbioinformatics.com/software.velvetk.shtml"
+SRC_URI="http://www.vicbioinformatics.com/velvetk.pl"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"
+
+src_prepare(){
+	cp -p "${DISTDIR}"/velvetk.pl . || die
+}
+
+src_install(){
+	dobin velvetk.pl
+}