[gentoo-commits] proj/sci:master commit in: sci-biology/YASRA/

[gentoo-commits] proj/sci:master commit in: sci-biology/YASRA/

[Martin Mokrejs]

commit:     77720905a9accfc399df3dc1559fa424e49b3c52
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Jan 17 00:53:08 2012 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Jan 17 00:53:08 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=77720905

sci-biology/YASRA: Yet Another Short Read Assembler to reference using LASTZ

(Portage version: 2.1.10.43/git/Linux i686, unsigned Manifest commit)

---
 sci-biology/YASRA/ChangeLog        |   10 ++++++++++
 sci-biology/YASRA/YASRA-2.1.ebuild |   24 ++++++++++++++++++++++++
 sci-biology/YASRA/metadata.xml     |    9 +++++++++
 3 files changed, 43 insertions(+), 0 deletions(-)

diff --git a/sci-biology/YASRA/ChangeLog b/sci-biology/YASRA/ChangeLog
new file mode 100644
index 0000000..17ca0d9
--- /dev/null
+++ b/sci-biology/YASRA/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/YASRA
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*YASRA-2.1 (17 Jan 2012)
+
+  17 Jan 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +YASRA-2.1.ebuild,
+  +metadata.xml:
+  initial ebuild
+

diff --git a/sci-biology/YASRA/YASRA-2.1.ebuild b/sci-biology/YASRA/YASRA-2.1.ebuild
new file mode 100644
index 0000000..3c3e10d
--- /dev/null
+++ b/sci-biology/YASRA/YASRA-2.1.ebuild
@@ -0,0 +1,24 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+DESCRIPTION="Yet Another Short Read Assembler aligning to a reference using LASTZ"
+HOMEPAGE="http://www.bx.psu.edu/miller_lab/"
+SRC_URI="http://www.bx.psu.edu/miller_lab/dist/YASRA-"${PV}".tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+	sci-biology/lastz"
+
+S="${WORKDIR}"/YASRA
+
+src_install(){
+	emake install DESTDIR="$D"
+}

diff --git a/sci-biology/YASRA/metadata.xml b/sci-biology/YASRA/metadata.xml
new file mode 100644
index 0000000..07b5255
--- /dev/null
+++ b/sci-biology/YASRA/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-biology</herd>
+	<maintainer>
+		<email>mmokrejs@fold.natur.cuni.cz</email>
+		<name>Martin Mokrejs</name>
+	</maintainer>
+</pkgmetadata>

[gentoo-commits] proj/sci:master commit in: sci-biology/YASRA/

[Martin Mokrejs]

commit:     6db28b038467ff791ae50cfca03424f899e608c0
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Mar 28 19:38:56 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Mar 28 19:38:56 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=6db28b03

sci-biology/YASRA: version bump to a version without compile errors when gcc-4.8 is used

Package-Manager: portage-2.2.7

---
 sci-biology/YASRA/ChangeLog                                | 10 ++++++++--
 sci-biology/YASRA/{YASRA-2.32.ebuild => YASRA-2.33.ebuild} |  0
 2 files changed, 8 insertions(+), 2 deletions(-)

diff --git a/sci-biology/YASRA/ChangeLog b/sci-biology/YASRA/ChangeLog
index bb0cc58..0d3e03b 100644
--- a/sci-biology/YASRA/ChangeLog
+++ b/sci-biology/YASRA/ChangeLog
@@ -1,7 +1,14 @@
 # ChangeLog for sci-biology/YASRA
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*YASRA-2.33 (28 Mar 2014)
+
+  28 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +YASRA-2.33.ebuild,
+  -YASRA-2.32.ebuild:
+  sci-biology/YASRA: version bump to a version without compile errors when
+  gcc-4.8 is used
+
   16 Jun 2013; Justin Lecher <jlec@gentoo.org> -YASRA-2.1.ebuild,
   +YASRA-2.32.ebuild:
   Version Bump; add KEYWORDS
@@ -14,4 +21,3 @@
   17 Jan 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +YASRA-2.1.ebuild,
   +metadata.xml:
   initial ebuild
-

diff --git a/sci-biology/YASRA/YASRA-2.32.ebuild b/sci-biology/YASRA/YASRA-2.33.ebuild
similarity index 100%
rename from sci-biology/YASRA/YASRA-2.32.ebuild
rename to sci-biology/YASRA/YASRA-2.33.ebuild

[gentoo-commits] proj/sci:master commit in: sci-biology/YASRA/

[Nicolas Bock]

commit:     e899aeb0db6071873ed8822a0dd0a90fafeb99b0
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Mar 28 19:38:56 2014 +0000
Commit:     Nicolas Bock <nicolasbock <AT> gmail <DOT> com>
CommitDate: Mon Mar 31 15:27:34 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e899aeb0

sci-biology/YASRA: version bump to a version without compile errors when gcc-4.8 is used

Package-Manager: portage-2.2.7

---
 sci-biology/YASRA/ChangeLog                                | 10 ++++++++--
 sci-biology/YASRA/{YASRA-2.32.ebuild => YASRA-2.33.ebuild} |  0
 2 files changed, 8 insertions(+), 2 deletions(-)

diff --git a/sci-biology/YASRA/ChangeLog b/sci-biology/YASRA/ChangeLog
index bb0cc58..0d3e03b 100644
--- a/sci-biology/YASRA/ChangeLog
+++ b/sci-biology/YASRA/ChangeLog
@@ -1,7 +1,14 @@
 # ChangeLog for sci-biology/YASRA
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*YASRA-2.33 (28 Mar 2014)
+
+  28 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +YASRA-2.33.ebuild,
+  -YASRA-2.32.ebuild:
+  sci-biology/YASRA: version bump to a version without compile errors when
+  gcc-4.8 is used
+
   16 Jun 2013; Justin Lecher <jlec@gentoo.org> -YASRA-2.1.ebuild,
   +YASRA-2.32.ebuild:
   Version Bump; add KEYWORDS
@@ -14,4 +21,3 @@
   17 Jan 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +YASRA-2.1.ebuild,
   +metadata.xml:
   initial ebuild
-

diff --git a/sci-biology/YASRA/YASRA-2.32.ebuild b/sci-biology/YASRA/YASRA-2.33.ebuild
similarity index 100%
rename from sci-biology/YASRA/YASRA-2.32.ebuild
rename to sci-biology/YASRA/YASRA-2.33.ebuild

[gentoo-commits] proj/sci:master commit in: sci-biology/YASRA/

[Horea Christian]

commit:     f2cc404f64c65d3421a697f55a4f3cf1d9008016
Author:     Horea Christian <chr <AT> chymera <DOT> eu>
AuthorDate: Fri Dec 25 10:03:18 2020 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Dec 25 10:03:18 2020 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=f2cc404f

sci-biology/YASRA: EAPI bump 7

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Horea Christian <chr <AT> chymera.eu>

 sci-biology/YASRA/YASRA-2.33.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/YASRA/YASRA-2.33.ebuild b/sci-biology/YASRA/YASRA-2.33.ebuild
index 77ca724dc..58e6da2b0 100644
--- a/sci-biology/YASRA/YASRA-2.33.ebuild
+++ b/sci-biology/YASRA/YASRA-2.33.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
 DESCRIPTION="Yet Another Short Read Assembler aligning to a reference using LASTZ"
 HOMEPAGE="http://www.bx.psu.edu/miller_lab/"