public inbox for gentoo-commits@lists.gentoo.org
 help / color / mirror / Atom feed
* [gentoo-commits] proj/sci:master commit in: sci-biology/RADtools/
@ 2014-03-28 14:32 Martin Mokrejs
  0 siblings, 0 replies; 7+ messages in thread
From: Martin Mokrejs @ 2014-03-28 14:32 UTC (permalink / raw
  To: gentoo-commits

commit:     ad11fbbfa39a988c9f85a2fa7278ab8ad0e25a4b
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Mar 28 14:30:53 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Mar 28 14:30:53 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ad11fbbf

sci-biology/RADtools: new package

Package-Manager: portage-2.2.7

---
 sci-biology/RADtools/ChangeLog             | 10 ++++++++
 sci-biology/RADtools/RADtools-1.2.4.ebuild | 37 ++++++++++++++++++++++++++++++
 sci-biology/RADtools/RADtools-9999.ebuild  | 37 ++++++++++++++++++++++++++++++
 sci-biology/RADtools/metadata.xml          |  9 ++++++++
 4 files changed, 93 insertions(+)

diff --git a/sci-biology/RADtools/ChangeLog b/sci-biology/RADtools/ChangeLog
new file mode 100644
index 0000000..0da9d19
--- /dev/null
+++ b/sci-biology/RADtools/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/RADtools
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*RADtools-1.2.4 (28 Mar 2014)
+*RADtools-9999 (28 Mar 2014)
+
+  28 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +RADtools-1.2.4.ebuild, +RADtools-9999.ebuild, +metadata.xml:
+  sci-biology/RADtools: new package

diff --git a/sci-biology/RADtools/RADtools-1.2.4.ebuild b/sci-biology/RADtools/RADtools-1.2.4.ebuild
new file mode 100644
index 0000000..fe4587c
--- /dev/null
+++ b/sci-biology/RADtools/RADtools-1.2.4.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit perl-module
+
+[ "$PV" == "9999" ] && inherit git-2
+
+DESCRIPTION="Tools for processing RAD Sequencing Illumina reads"
+HOMEPAGE="https://www.wiki.ed.ac.uk/display/RADSequencing/Home"
+
+if [ "$PV" == "9999" ]; then
+	EGIT_REPO_URI="git://github.com/johnomics/RADtools.git"
+	KEYWORDS=""
+else
+	SRC_URI="https://www.wiki.ed.ac.uk/download/attachments/68630442/RADtools_"${PV}".tar.gz
+		https://www.wiki.ed.ac.uk/download/attachments/68630442/RADmanual.pdf"
+	KEYWORDS="~amd64"
+	S="${WORKDIR}"
+fi
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+
+DEPEND=">=dev-lang/perl-5.10
+	dev-perl/Parallel-ForkManager"
+RDEPEND="${DEPEND}"
+
+src_install() {
+	dobin RADMIDs RADmarkers RADpools RADtags
+	mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README"
+	perl-module_src_install DESTDIR="${D}" # install  RADtools.pm into @INC path
+}
+

diff --git a/sci-biology/RADtools/RADtools-9999.ebuild b/sci-biology/RADtools/RADtools-9999.ebuild
new file mode 100644
index 0000000..fe4587c
--- /dev/null
+++ b/sci-biology/RADtools/RADtools-9999.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit perl-module
+
+[ "$PV" == "9999" ] && inherit git-2
+
+DESCRIPTION="Tools for processing RAD Sequencing Illumina reads"
+HOMEPAGE="https://www.wiki.ed.ac.uk/display/RADSequencing/Home"
+
+if [ "$PV" == "9999" ]; then
+	EGIT_REPO_URI="git://github.com/johnomics/RADtools.git"
+	KEYWORDS=""
+else
+	SRC_URI="https://www.wiki.ed.ac.uk/download/attachments/68630442/RADtools_"${PV}".tar.gz
+		https://www.wiki.ed.ac.uk/download/attachments/68630442/RADmanual.pdf"
+	KEYWORDS="~amd64"
+	S="${WORKDIR}"
+fi
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+
+DEPEND=">=dev-lang/perl-5.10
+	dev-perl/Parallel-ForkManager"
+RDEPEND="${DEPEND}"
+
+src_install() {
+	dobin RADMIDs RADmarkers RADpools RADtags
+	mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README"
+	perl-module_src_install DESTDIR="${D}" # install  RADtools.pm into @INC path
+}
+

diff --git a/sci-biology/RADtools/metadata.xml b/sci-biology/RADtools/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/RADtools/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>


^ permalink raw reply related	[flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/RADtools/
@ 2014-03-31 15:28 Nicolas Bock
  0 siblings, 0 replies; 7+ messages in thread
From: Nicolas Bock @ 2014-03-31 15:28 UTC (permalink / raw
  To: gentoo-commits

commit:     5455ecb6436bc4876f92dccf91cf100d3ec2cc5b
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Mar 28 14:30:53 2014 +0000
Commit:     Nicolas Bock <nicolasbock <AT> gmail <DOT> com>
CommitDate: Mon Mar 31 15:27:34 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5455ecb6

sci-biology/RADtools: new package

Package-Manager: portage-2.2.7

---
 sci-biology/RADtools/ChangeLog             | 10 ++++++++
 sci-biology/RADtools/RADtools-1.2.4.ebuild | 37 ++++++++++++++++++++++++++++++
 sci-biology/RADtools/RADtools-9999.ebuild  | 37 ++++++++++++++++++++++++++++++
 sci-biology/RADtools/metadata.xml          |  9 ++++++++
 4 files changed, 93 insertions(+)

diff --git a/sci-biology/RADtools/ChangeLog b/sci-biology/RADtools/ChangeLog
new file mode 100644
index 0000000..0da9d19
--- /dev/null
+++ b/sci-biology/RADtools/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/RADtools
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*RADtools-1.2.4 (28 Mar 2014)
+*RADtools-9999 (28 Mar 2014)
+
+  28 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +RADtools-1.2.4.ebuild, +RADtools-9999.ebuild, +metadata.xml:
+  sci-biology/RADtools: new package

diff --git a/sci-biology/RADtools/RADtools-1.2.4.ebuild b/sci-biology/RADtools/RADtools-1.2.4.ebuild
new file mode 100644
index 0000000..fe4587c
--- /dev/null
+++ b/sci-biology/RADtools/RADtools-1.2.4.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit perl-module
+
+[ "$PV" == "9999" ] && inherit git-2
+
+DESCRIPTION="Tools for processing RAD Sequencing Illumina reads"
+HOMEPAGE="https://www.wiki.ed.ac.uk/display/RADSequencing/Home"
+
+if [ "$PV" == "9999" ]; then
+	EGIT_REPO_URI="git://github.com/johnomics/RADtools.git"
+	KEYWORDS=""
+else
+	SRC_URI="https://www.wiki.ed.ac.uk/download/attachments/68630442/RADtools_"${PV}".tar.gz
+		https://www.wiki.ed.ac.uk/download/attachments/68630442/RADmanual.pdf"
+	KEYWORDS="~amd64"
+	S="${WORKDIR}"
+fi
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+
+DEPEND=">=dev-lang/perl-5.10
+	dev-perl/Parallel-ForkManager"
+RDEPEND="${DEPEND}"
+
+src_install() {
+	dobin RADMIDs RADmarkers RADpools RADtags
+	mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README"
+	perl-module_src_install DESTDIR="${D}" # install  RADtools.pm into @INC path
+}
+

diff --git a/sci-biology/RADtools/RADtools-9999.ebuild b/sci-biology/RADtools/RADtools-9999.ebuild
new file mode 100644
index 0000000..fe4587c
--- /dev/null
+++ b/sci-biology/RADtools/RADtools-9999.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit perl-module
+
+[ "$PV" == "9999" ] && inherit git-2
+
+DESCRIPTION="Tools for processing RAD Sequencing Illumina reads"
+HOMEPAGE="https://www.wiki.ed.ac.uk/display/RADSequencing/Home"
+
+if [ "$PV" == "9999" ]; then
+	EGIT_REPO_URI="git://github.com/johnomics/RADtools.git"
+	KEYWORDS=""
+else
+	SRC_URI="https://www.wiki.ed.ac.uk/download/attachments/68630442/RADtools_"${PV}".tar.gz
+		https://www.wiki.ed.ac.uk/download/attachments/68630442/RADmanual.pdf"
+	KEYWORDS="~amd64"
+	S="${WORKDIR}"
+fi
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+
+DEPEND=">=dev-lang/perl-5.10
+	dev-perl/Parallel-ForkManager"
+RDEPEND="${DEPEND}"
+
+src_install() {
+	dobin RADMIDs RADmarkers RADpools RADtags
+	mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README"
+	perl-module_src_install DESTDIR="${D}" # install  RADtools.pm into @INC path
+}
+

diff --git a/sci-biology/RADtools/metadata.xml b/sci-biology/RADtools/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/RADtools/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>


^ permalink raw reply related	[flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/RADtools/
@ 2014-09-16 17:01 Christoph Junghans
  0 siblings, 0 replies; 7+ messages in thread
From: Christoph Junghans @ 2014-09-16 17:01 UTC (permalink / raw
  To: gentoo-commits

commit:     3a1428700a5f5fcd550687de38692433b81a3222
Author:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 16 16:19:22 2014 +0000
Commit:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Tue Sep 16 16:19:22 2014 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3a142870

removed empty line

Package-Manager: portage-2.2.8-r1

---
 sci-biology/RADtools/ChangeLog             | 4 ++++
 sci-biology/RADtools/RADtools-1.2.4.ebuild | 1 -
 sci-biology/RADtools/RADtools-9999.ebuild  | 1 -
 3 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/sci-biology/RADtools/ChangeLog b/sci-biology/RADtools/ChangeLog
index 0da9d19..5896f96 100644
--- a/sci-biology/RADtools/ChangeLog
+++ b/sci-biology/RADtools/ChangeLog
@@ -2,6 +2,10 @@
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  16 Sep 2014; Christoph Junghans <ottxor@gentoo.org> RADtools-1.2.4.ebuild,
+  RADtools-9999.ebuild:
+  removed empty line
+
 *RADtools-1.2.4 (28 Mar 2014)
 *RADtools-9999 (28 Mar 2014)
 

diff --git a/sci-biology/RADtools/RADtools-1.2.4.ebuild b/sci-biology/RADtools/RADtools-1.2.4.ebuild
index fe4587c..3000e76 100644
--- a/sci-biology/RADtools/RADtools-1.2.4.ebuild
+++ b/sci-biology/RADtools/RADtools-1.2.4.ebuild
@@ -34,4 +34,3 @@ src_install() {
 	mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README"
 	perl-module_src_install DESTDIR="${D}" # install  RADtools.pm into @INC path
 }
-

diff --git a/sci-biology/RADtools/RADtools-9999.ebuild b/sci-biology/RADtools/RADtools-9999.ebuild
index fe4587c..3000e76 100644
--- a/sci-biology/RADtools/RADtools-9999.ebuild
+++ b/sci-biology/RADtools/RADtools-9999.ebuild
@@ -34,4 +34,3 @@ src_install() {
 	mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README"
 	perl-module_src_install DESTDIR="${D}" # install  RADtools.pm into @INC path
 }
-


^ permalink raw reply related	[flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/RADtools/
@ 2015-01-08 22:38 Martin Mokrejs
  0 siblings, 0 replies; 7+ messages in thread
From: Martin Mokrejs @ 2015-01-08 22:38 UTC (permalink / raw
  To: gentoo-commits

commit:     1595e219f373ab70f35f7e7dc96c9aec10518de3
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Jan  8 22:37:29 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Jan  8 22:37:29 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1595e219

sci-biology/RADtools: manually install perl modules int PERL5INC path

Package-Manager: portage-2.2.7

---
 sci-biology/RADtools/ChangeLog             |  6 +++++-
 sci-biology/RADtools/RADtools-1.2.4.ebuild |  8 ++++++--
 sci-biology/RADtools/RADtools-9999.ebuild  | 10 ++++++----
 3 files changed, 17 insertions(+), 7 deletions(-)

diff --git a/sci-biology/RADtools/ChangeLog b/sci-biology/RADtools/ChangeLog
index 5896f96..6038117 100644
--- a/sci-biology/RADtools/ChangeLog
+++ b/sci-biology/RADtools/ChangeLog
@@ -1,7 +1,11 @@
 # ChangeLog for sci-biology/RADtools
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  08 Jan 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  RADtools-1.2.4.ebuild, RADtools-9999.ebuild:
+  sci-biology/RADtools: manually install perl modules int PERL5INC path
+
   16 Sep 2014; Christoph Junghans <ottxor@gentoo.org> RADtools-1.2.4.ebuild,
   RADtools-9999.ebuild:
   removed empty line

diff --git a/sci-biology/RADtools/RADtools-1.2.4.ebuild b/sci-biology/RADtools/RADtools-1.2.4.ebuild
index 3000e76..5dc2ef3 100644
--- a/sci-biology/RADtools/RADtools-1.2.4.ebuild
+++ b/sci-biology/RADtools/RADtools-1.2.4.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
@@ -32,5 +32,9 @@ RDEPEND="${DEPEND}"
 src_install() {
 	dobin RADMIDs RADmarkers RADpools RADtags
 	mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README"
-	perl-module_src_install DESTDIR="${D}" # install  RADtools.pm into @INC path
+	eval `perl '-V:installvendorlib'`
+	vendor_lib_install_dir="${installvendorlib}"
+	dodir ${vendor_lib_install_dir}
+	insinto ${vendor_lib_install_dir}
+	doins *.pm
 }

diff --git a/sci-biology/RADtools/RADtools-9999.ebuild b/sci-biology/RADtools/RADtools-9999.ebuild
index 3000e76..44754f5 100644
--- a/sci-biology/RADtools/RADtools-9999.ebuild
+++ b/sci-biology/RADtools/RADtools-9999.ebuild
@@ -1,11 +1,9 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
 EAPI=5
 
-inherit perl-module
-
 [ "$PV" == "9999" ] && inherit git-2
 
 DESCRIPTION="Tools for processing RAD Sequencing Illumina reads"
@@ -32,5 +30,9 @@ RDEPEND="${DEPEND}"
 src_install() {
 	dobin RADMIDs RADmarkers RADpools RADtags
 	mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README"
-	perl-module_src_install DESTDIR="${D}" # install  RADtools.pm into @INC path
+	eval `perl '-V:installvendorlib'`
+	vendor_lib_install_dir="${installvendorlib}"
+	dodir ${vendor_lib_install_dir}
+	insinto ${vendor_lib_install_dir}
+	doins *.pm
 }


^ permalink raw reply related	[flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/RADtools/
@ 2016-02-14 17:32 Justin Lecher
  0 siblings, 0 replies; 7+ messages in thread
From: Justin Lecher @ 2016-02-14 17:32 UTC (permalink / raw
  To: gentoo-commits

commit:     b9597bcf0d83a5e0e9d414414bef516ad292e325
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Feb 14 17:25:03 2016 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Feb 14 17:25:12 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b9597bcf

sci-biology/RADtools: Bump to EAPI=6

* Use git-r3.eclass

Package-Manager: portage-2.2.27
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-biology/RADtools/RADtools-1.2.4.ebuild | 25 +++++++++----------------
 sci-biology/RADtools/RADtools-9999.ebuild  | 25 +++++++++----------------
 sci-biology/RADtools/metadata.xml          |  2 +-
 3 files changed, 19 insertions(+), 33 deletions(-)

diff --git a/sci-biology/RADtools/RADtools-1.2.4.ebuild b/sci-biology/RADtools/RADtools-1.2.4.ebuild
index 967e6e3..84db02f 100644
--- a/sci-biology/RADtools/RADtools-1.2.4.ebuild
+++ b/sci-biology/RADtools/RADtools-1.2.4.ebuild
@@ -1,40 +1,33 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI=5
+EAPI=6
 
 inherit perl-module
 
-[ "$PV" == "9999" ] && inherit git-2
-
 DESCRIPTION="Tools for processing RAD Sequencing Illumina reads"
 HOMEPAGE="https://www.wiki.ed.ac.uk/display/RADSequencing/Home"
-
-if [ "$PV" == "9999" ]; then
-	EGIT_REPO_URI="git://github.com/johnomics/RADtools.git"
-	KEYWORDS=""
-else
-	SRC_URI="https://www.wiki.ed.ac.uk/download/attachments/68630442/RADtools_"${PV}".tar.gz
-		https://www.wiki.ed.ac.uk/download/attachments/68630442/RADmanual.pdf"
-	KEYWORDS="~amd64"
-	S="${WORKDIR}"
-fi
+SRC_URI="
+	https://www.wiki.ed.ac.uk/download/attachments/68630442/RADtools_${PV}.tar.gz
+	https://www.wiki.ed.ac.uk/download/attachments/68630442/RADmanual.pdf"
 
 LICENSE="GPL-3"
 SLOT="0"
+KEYWORDS="~amd64"
 IUSE=""
 
 DEPEND=">=dev-lang/perl-5.10
 	dev-perl/Parallel-ForkManager"
 RDEPEND="${DEPEND}"
 
+S="${WORKDIR}"
+
 src_install() {
 	dobin RADMIDs RADmarkers RADpools RADtags
 	mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README"
-	eval `perl '-V:installvendorlib'`
+	eval `perl '-V:installvendorlib'` || die
 	vendor_lib_install_dir="${installvendorlib}"
-	dodir ${vendor_lib_install_dir}
 	insinto ${vendor_lib_install_dir}
 	doins *.pm
 }

diff --git a/sci-biology/RADtools/RADtools-9999.ebuild b/sci-biology/RADtools/RADtools-9999.ebuild
index 257cbe9..6f705b1 100644
--- a/sci-biology/RADtools/RADtools-9999.ebuild
+++ b/sci-biology/RADtools/RADtools-9999.ebuild
@@ -1,38 +1,31 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI=5
+EAPI=6
 
-[ "$PV" == "9999" ] && inherit git-2
+inherit perl-module git-r3
 
 DESCRIPTION="Tools for processing RAD Sequencing Illumina reads"
 HOMEPAGE="https://www.wiki.ed.ac.uk/display/RADSequencing/Home"
-
-if [ "$PV" == "9999" ]; then
-	EGIT_REPO_URI="git://github.com/johnomics/RADtools.git"
-	KEYWORDS=""
-else
-	SRC_URI="https://www.wiki.ed.ac.uk/download/attachments/68630442/RADtools_"${PV}".tar.gz
-		https://www.wiki.ed.ac.uk/download/attachments/68630442/RADmanual.pdf"
-	KEYWORDS="~amd64"
-	S="${WORKDIR}"
-fi
+EGIT_REPO_URI="git://github.com/johnomics/RADtools.git"
 
 LICENSE="GPL-3"
 SLOT="0"
+KEYWORDS=""
 IUSE=""
 
-DEPEND=">=dev-lang/perl-5.10
+DEPEND="
+	>=dev-lang/perl-5.10
 	dev-perl/Parallel-ForkManager"
 RDEPEND="${DEPEND}"
 
 src_install() {
 	dobin RADMIDs RADmarkers RADpools RADtags
 	mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README"
-	eval `perl '-V:installvendorlib'`
+	eval `perl '-V:installvendorlib'` || die
 	vendor_lib_install_dir="${installvendorlib}"
-	dodir ${vendor_lib_install_dir}
+
 	insinto ${vendor_lib_install_dir}
 	doins *.pm
 }

diff --git a/sci-biology/RADtools/metadata.xml b/sci-biology/RADtools/metadata.xml
index 1699e58..f68a1b6 100644
--- a/sci-biology/RADtools/metadata.xml
+++ b/sci-biology/RADtools/metadata.xml
@@ -5,7 +5,7 @@
     <email>mmokrejs@fold.natur.cuni.cz</email>
     <name>Martin Mokrejs</name>
   </maintainer>
-<maintainer type="project">
+  <maintainer type="project">
     <email>sci-biology@gentoo.org</email>
     <name>Gentoo Biology Project</name>
   </maintainer>


^ permalink raw reply related	[flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/RADtools/
@ 2017-02-18 14:46 Martin Mokrejs
  0 siblings, 0 replies; 7+ messages in thread
From: Martin Mokrejs @ 2017-02-18 14:46 UTC (permalink / raw
  To: gentoo-commits

commit:     5d63f79f6272b2945b30c2539535cb4f8e352dae
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Feb 18 14:46:22 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Feb 18 14:46:22 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=5d63f79f

sci-biology/RADtools: fix installation procedure

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 sci-biology/RADtools/RADtools-1.2.4.ebuild | 14 +++++++-------
 sci-biology/RADtools/RADtools-9999.ebuild  | 15 +++++++--------
 2 files changed, 14 insertions(+), 15 deletions(-)

diff --git a/sci-biology/RADtools/RADtools-1.2.4.ebuild b/sci-biology/RADtools/RADtools-1.2.4.ebuild
index 84db02f70..d316384e2 100644
--- a/sci-biology/RADtools/RADtools-1.2.4.ebuild
+++ b/sci-biology/RADtools/RADtools-1.2.4.ebuild
@@ -1,10 +1,11 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI=6
+EAPI=5
 
-inherit perl-module
+PERL_EXPORT_PHASE_FUNCTIONS=no
+inherit eutils perl-module
 
 DESCRIPTION="Tools for processing RAD Sequencing Illumina reads"
 HOMEPAGE="https://www.wiki.ed.ac.uk/display/RADSequencing/Home"
@@ -25,9 +26,8 @@ S="${WORKDIR}"
 
 src_install() {
 	dobin RADMIDs RADmarkers RADpools RADtags
-	mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README"
-	eval `perl '-V:installvendorlib'` || die
-	vendor_lib_install_dir="${installvendorlib}"
-	insinto ${vendor_lib_install_dir}
+	dodoc CHANGELOG RADmanual.pdf RADmanual.tex README
+	perl_set_version
+	insinto "${VENDOR_LIB}"
 	doins *.pm
 }

diff --git a/sci-biology/RADtools/RADtools-9999.ebuild b/sci-biology/RADtools/RADtools-9999.ebuild
index 6f705b1f7..b1d09180e 100644
--- a/sci-biology/RADtools/RADtools-9999.ebuild
+++ b/sci-biology/RADtools/RADtools-9999.ebuild
@@ -1,10 +1,11 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2017 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI=6
+EAPI=5
 
-inherit perl-module git-r3
+PERL_EXPORT_PHASE_FUNCTIONS=no
+inherit eutils perl-module git-r3
 
 DESCRIPTION="Tools for processing RAD Sequencing Illumina reads"
 HOMEPAGE="https://www.wiki.ed.ac.uk/display/RADSequencing/Home"
@@ -22,10 +23,8 @@ RDEPEND="${DEPEND}"
 
 src_install() {
 	dobin RADMIDs RADmarkers RADpools RADtags
-	mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README"
-	eval `perl '-V:installvendorlib'` || die
-	vendor_lib_install_dir="${installvendorlib}"
-
-	insinto ${vendor_lib_install_dir}
+	dodoc CHANGELOG RADmanual.pdf RADmanual.tex README
+	perl_set_version
+	insinto "${VENDOR_LIB}"
 	doins *.pm
 }


^ permalink raw reply related	[flat|nested] 7+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/RADtools/
@ 2018-01-20 21:26 Martin Mokrejs
  0 siblings, 0 replies; 7+ messages in thread
From: Martin Mokrejs @ 2018-01-20 21:26 UTC (permalink / raw
  To: gentoo-commits

commit:     e375ed765819d234493d015043ef0100285b32df
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Jan 20 21:24:00 2018 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Jan 20 21:24:00 2018 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=e375ed76

sci-biology/RADtools: switch git:// to https://

Package-Manager: Portage-2.3.19, Repoman-2.3.6

 sci-biology/RADtools/RADtools-9999.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-biology/RADtools/RADtools-9999.ebuild b/sci-biology/RADtools/RADtools-9999.ebuild
index 9303ea0ca..bdee24f78 100644
--- a/sci-biology/RADtools/RADtools-9999.ebuild
+++ b/sci-biology/RADtools/RADtools-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
@@ -8,7 +8,7 @@ inherit eutils perl-module git-r3
 
 DESCRIPTION="Tools for processing RAD Sequencing Illumina reads"
 HOMEPAGE="https://www.wiki.ed.ac.uk/display/RADSequencing/Home"
-EGIT_REPO_URI="git://github.com/johnomics/RADtools.git"
+EGIT_REPO_URI="https://github.com/johnomics/RADtools.git"
 
 LICENSE="GPL-3"
 SLOT="0"


^ permalink raw reply related	[flat|nested] 7+ messages in thread
end of thread, other threads:[~2018-01-20 21:26 UTC | newest]

Thread overview: 7+ messages (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2014-03-28 14:32 [gentoo-commits] proj/sci:master commit in: sci-biology/RADtools/ Martin Mokrejs
  -- strict thread matches above, loose matches on Subject: below --
2014-03-31 15:28 Nicolas Bock
2014-09-16 17:01 Christoph Junghans
2015-01-08 22:38 Martin Mokrejs
2016-02-14 17:32 Justin Lecher
2017-02-18 14:46 Martin Mokrejs
2018-01-20 21:26 Martin Mokrejs

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox