[gentoo-commits] proj/sci:master commit in: sci-biology/freebayes/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     5c73aaa78d02e3b384be3b52120625ed8b507e19
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Mar 24 01:41:35 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Mar 24 01:41:35 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5c73aaa7

sci-biology/freebayes: a new package skeleton; need to retrive from git in a recursive way

---
 sci-biology/freebayes/ChangeLog             | 10 ++++++++++
 sci-biology/freebayes/freebayes-9999.ebuild | 30 +++++++++++++++++++++++++++++
 sci-biology/freebayes/metadata.xml          |  9 +++++++++
 3 files changed, 49 insertions(+)

diff --git a/sci-biology/freebayes/ChangeLog b/sci-biology/freebayes/ChangeLog
new file mode 100644
index 0000000..17424da
--- /dev/null
+++ b/sci-biology/freebayes/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/freebayes
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*freebayes-9999 (24 Mar 2014)
+
+  24 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +freebayes-9999.ebuild, +metadata.xml:
+  a new package skeleton; need to retrive from git in a recursive way
+

diff --git a/sci-biology/freebayes/freebayes-9999.ebuild b/sci-biology/freebayes/freebayes-9999.ebuild
new file mode 100644
index 0000000..0876efb
--- /dev/null
+++ b/sci-biology/freebayes/freebayes-9999.ebuild
@@ -0,0 +1,30 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit eutils
+
+[ "$PV" == "9999" ] && inherit git-2
+
+DESCRIPTION="Bayesian genetic variant detector designed to find small polymorphisms: SNPs, indels, MNPs and complex events"
+HOMEPAGE="https://github.com/ekg/freebayes"
+EGIT_REPO_URI="git://github.com/ekg/freebayes.git"
+
+# need top checkout vcflib/ as well
+#
+# To build freebayes you must use git to also download its submodules.
+#   Do so by downloading freebayes again using this command (note --recursive flag):
+#   git clone --recursive git://github.com/ekg/freebayes.git
+#
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+	sci-biology/bamtools
+	sci-biology/samtools"

diff --git a/sci-biology/freebayes/metadata.xml b/sci-biology/freebayes/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/freebayes/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>