[gentoo-commits] proj/sci:master commit in: sci-biology/sickle/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     2d2c3a2f74c6633b68cdfad591123bdc24d10935
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Mar 24 00:33:10 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Mar 24 00:33:10 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2d2c3a2f

sci-biology/sickle: new package

---
 sci-biology/sickle/ChangeLog          | 11 +++++++++++
 sci-biology/sickle/metadata.xml       |  9 +++++++++
 sci-biology/sickle/sickle-9999.ebuild | 25 +++++++++++++++++++++++++
 3 files changed, 45 insertions(+)

diff --git a/sci-biology/sickle/ChangeLog b/sci-biology/sickle/ChangeLog
new file mode 100644
index 0000000..bdbc7e7
--- /dev/null
+++ b/sci-biology/sickle/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for sci-biology/sickle
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*sickle-9999 (24 Mar 2014)
+
+  24 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +sickle-9999.ebuild, +metadata.xml:
+  simple ebuild, bundled Makefile forces compile flags, program version, but
+  works
+

diff --git a/sci-biology/sickle/metadata.xml b/sci-biology/sickle/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/sickle/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@fold.natur.cuni.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/sci-biology/sickle/sickle-9999.ebuild b/sci-biology/sickle/sickle-9999.ebuild
new file mode 100644
index 0000000..46f0e91
--- /dev/null
+++ b/sci-biology/sickle/sickle-9999.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit eutils git-r3
+
+DESCRIPTION="Windowed adaptive adaptor trimming tool for FASTQ data from Illumina/Solexa"
+HOMEPAGE="https://github.com/najoshi/sickle"
+EGIT_REPO_URI="https://github.com/najoshi/sickle"
+
+LICENSE="sickle"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+	sys-libs/zlib"
+
+src_install(){
+	dobin sickle
+	dodoc README.md
+}