From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id F20AC1391DB for ; Sun, 23 Mar 2014 23:00:38 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 8A470E0BD8; Sun, 23 Mar 2014 23:00:35 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 1C0DFE0BD8 for ; Sun, 23 Mar 2014 23:00:34 +0000 (UTC) Received: from spoonbill.gentoo.org (spoonbill.gentoo.org [81.93.255.5]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id DE2C433E1C2 for ; Sun, 23 Mar 2014 23:00:33 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by spoonbill.gentoo.org (Postfix) with ESMTP id 5D4E7188EB for ; Sun, 23 Mar 2014 23:00:31 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1395615552.0da34aea17b8bc8a2d2f088acb0296dcfdd6b923.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/igv/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/igv/ChangeLog sci-biology/igv/igv-2.0.35.ebuild X-VCS-Directories: sci-biology/igv/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 0da34aea17b8bc8a2d2f088acb0296dcfdd6b923 X-VCS-Branch: master Date: Sun, 23 Mar 2014 23:00:31 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 6c1ef3fc-3b62-405a-a42b-bce0878341ca X-Archives-Hash: e9b7e13ee37c40dde3ea56eb3e17cc99 commit: 0da34aea17b8bc8a2d2f088acb0296dcfdd6b923 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Sun Mar 23 22:59:12 2014 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Sun Mar 23 22:59:12 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0da34aea sci-biology/igv-2.0.35: version bump Package-Manager: portage-2.2.7 --- sci-biology/igv/ChangeLog | 8 ++++++-- sci-biology/igv/igv-2.0.35.ebuild | 35 +++++++++++++++++++++++++++++++++++ 2 files changed, 41 insertions(+), 2 deletions(-) diff --git a/sci-biology/igv/ChangeLog b/sci-biology/igv/ChangeLog index 69f3a962..de4a770 100644 --- a/sci-biology/igv/ChangeLog +++ b/sci-biology/igv/ChangeLog @@ -1,7 +1,11 @@ # ChangeLog for sci-biology/igv -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*igv-2.0.35 (23 Mar 2014) + + 23 Mar 2014; Martin Mokrejs +igv-2.0.35.ebuild: + sci-biology/igv-2.0.35: version bump + 08 Jan 2012; Andrey Kislyuk ChangeLog: New package, ebuild written by me - diff --git a/sci-biology/igv/igv-2.0.35.ebuild b/sci-biology/igv/igv-2.0.35.ebuild new file mode 100644 index 0000000..67a0c5b --- /dev/null +++ b/sci-biology/igv/igv-2.0.35.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=4 + +#ESVN_REPO_URI="http://igv.googlecode.com/svn/trunk" +ESVN_REPO_URI="http://igv.googlecode.com/svn/tags/Version_${PV}" + +EANT_BUILD_TARGET="all" +JAVA_ANT_REWRITE_CLASSPATH="true" +EANT_NEEDS_TOOLS="true" +WANT_ANT_TASKS="ant-apache-bcel" + +inherit subversion java-pkg-2 java-ant-2 + +DESCRIPTION="Integrative Genomics Viewer" +HOMEPAGE="http://www.broadinstitute.org/igv/" +SRC_URI="" +LICENSE="LGPL-2.1" +SLOT="0" +IUSE="" +KEYWORDS="~amd64" + +COMMON_DEPS="" +DEPEND=">=virtual/jdk-1.6 + ${COMMON_DEPS}" +RDEPEND=">=virtual/jre-1.6 + ${COMMON_DEPS}" + +src_install() { + java-pkg_newjar igv.jar + for i in lib/*.jar; do java-pkg_dojar $i; done + java-pkg_dolauncher igv --jar igv.jar --main org.broad.igv.ui.Main +}