* [gentoo-commits] proj/sci:master commit in: sci-biology/CONTIGuator/
@ 2014-03-23 21:18 Martin Mokrejs
0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2014-03-23 21:18 UTC (permalink / raw
To: gentoo-commits
commit: 2936011cc3d58e899d76a0cad6e666ce1cd02005
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 21:17:39 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 21:17:39 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2936011c
sci-biology/CONTIGuator: a skeleton for a new package, needs sci-biology/artemis or sci-biology/artemis-bin
---
sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild | 17 +++++++++++++++++
sci-biology/CONTIGuator/metadata.xml | 9 +++++++++
2 files changed, 26 insertions(+)
diff --git a/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild b/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild
new file mode 100644
index 0000000..84dd28c
--- /dev/null
+++ b/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild
@@ -0,0 +1,17 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+DESCRIPTION="Speed up bacterial genome assemblies by artemis and compare chromosome regions"
+HOMEPAGE="http://contiguator.sourceforge.net"
+SRC_URI="http://downloads.sourceforge.net/project/contiguator/CONTIGuator_v2.7.tar.gz"
+
+LICENSE=""
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="( sci-biology/artemis sci-biology/artemis-bin )"
+RDEPEND="${DEPEND}"
diff --git a/sci-biology/CONTIGuator/metadata.xml b/sci-biology/CONTIGuator/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/CONTIGuator/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/CONTIGuator/
@ 2014-09-16 0:26 Christoph Junghans
0 siblings, 0 replies; 4+ messages in thread
From: Christoph Junghans @ 2014-09-16 0:26 UTC (permalink / raw
To: gentoo-commits
commit: c4fd5d587ad57051a7e27c12d2d33f01714c6e77
Author: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 16 00:25:47 2014 +0000
Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Tue Sep 16 00:26:07 2014 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=c4fd5d58
added license
Package-Manager: portage-2.2.8-r1
---
sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild | 2 +-
sci-biology/CONTIGuator/ChangeLog | 6 ++++++
2 files changed, 7 insertions(+), 1 deletion(-)
diff --git a/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild b/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild
index 84dd28c..2b7f20e 100644
--- a/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild
+++ b/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild
@@ -8,7 +8,7 @@ DESCRIPTION="Speed up bacterial genome assemblies by artemis and compare chromos
HOMEPAGE="http://contiguator.sourceforge.net"
SRC_URI="http://downloads.sourceforge.net/project/contiguator/CONTIGuator_v2.7.tar.gz"
-LICENSE=""
+LICENSE="GPL-3"
SLOT="0"
KEYWORDS=""
IUSE=""
diff --git a/sci-biology/CONTIGuator/ChangeLog b/sci-biology/CONTIGuator/ChangeLog
new file mode 100644
index 0000000..5efb07b
--- /dev/null
+++ b/sci-biology/CONTIGuator/ChangeLog
@@ -0,0 +1,6 @@
+# ChangeLog for sci-biology/CONTIGuator
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+ 16 Sep 2014; Christoph Junghans <ottxor@gentoo.org> CONTIGuator-2.7.ebuild:
+ added license
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/CONTIGuator/
@ 2016-03-30 21:27 Martin Mokrejs
0 siblings, 0 replies; 4+ messages in thread
From: Martin Mokrejs @ 2016-03-30 21:27 UTC (permalink / raw
To: gentoo-commits
commit: eb4301c49eff60ce66d076810afbe5a0ed385f9e
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Mar 30 21:25:16 2016 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Mar 30 21:25:16 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=eb4301c4
sci-biology/CONTIGuator: version bump; added KEYWORDS because DEPENDencies are in the tree now
Package-Manager: portage-2.2.28
sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild | 31 ++++++++++++++++++++++++
sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild | 17 -------------
2 files changed, 31 insertions(+), 17 deletions(-)
diff --git a/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild b/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild
new file mode 100644
index 0000000..b86613b
--- /dev/null
+++ b/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+DESCRIPTION="Speed up bacterial genome assemblies by artemis and compare chromosome regions"
+HOMEPAGE="http://contiguator.sourceforge.net"
+SRC_URI="http://downloads.sourceforge.net/project/contiguator/CONTIGuator_v2.7.tar.gz
+ https://sourceforge.net/projects/contiguator/files/README.md"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+ >=sci-biology/abacas-1.3.1
+ sci-biology/primer3
+ || ( sci-biology/ncbi-tools++ sci-biology/ncbi-blast+ )
+ sci-biology/biopython
+ sci-biology/mummer
+ || ( sci-biology/artemis || ( sci-biology/artemis-bin sci-biology/act-bin ) )"
+
+S="${WORKDIR}"/CONTIGuator_v"${PV}"
+
+src_install(){
+ dobin CONTIGuator.py
+ dodoc Manual.pdf "${DISTDIR}"/README.md
+}
diff --git a/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild b/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild
deleted file mode 100644
index 6609fc0..0000000
--- a/sci-biology/CONTIGuator/CONTIGuator-2.7.ebuild
+++ /dev/null
@@ -1,17 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-DESCRIPTION="Speed up bacterial genome assemblies by artemis and compare chromosome regions"
-HOMEPAGE="http://contiguator.sourceforge.net"
-SRC_URI="http://downloads.sourceforge.net/project/contiguator/CONTIGuator_v2.7.tar.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="( sci-biology/artemis sci-biology/artemis-bin )"
-RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/CONTIGuator/
@ 2017-03-26 14:45 Justin Lecher
0 siblings, 0 replies; 4+ messages in thread
From: Justin Lecher @ 2017-03-26 14:45 UTC (permalink / raw
To: gentoo-commits
commit: 3b1d8a8219f3a35e2ab5c91b2c14718e0138a59f
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Sun Mar 26 08:52:47 2017 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sun Mar 26 08:52:47 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3b1d8a82
Remove broken package
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild | 30 ------------------------
sci-biology/CONTIGuator/metadata.xml | 15 ------------
2 files changed, 45 deletions(-)
diff --git a/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild b/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild
deleted file mode 100644
index 862890bf6..000000000
--- a/sci-biology/CONTIGuator/CONTIGuator-2.7.3.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-DESCRIPTION="Speed up bacterial genome assemblies by artemis and compare chromosome regions"
-HOMEPAGE="http://contiguator.sourceforge.net"
-SRC_URI="http://downloads.sourceforge.net/project/contiguator/CONTIGuator_v2.7.tar.gz
- https://sourceforge.net/projects/contiguator/files/README.md"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-DEPEND=""
-RDEPEND="${DEPEND}
- >=sci-biology/abacas-1.3.1
- sci-biology/primer3
- || ( sci-biology/ncbi-tools++ sci-biology/ncbi-blast+ )
- sci-biology/biopython
- sci-biology/mummer
- || ( sci-biology/artemis || ( sci-biology/artemis-bin sci-biology/act-bin ) )"
-
-S="${WORKDIR}"/CONTIGuator_v"${PV}"
-
-src_install(){
- dobin CONTIGuator.py
- dodoc Manual.pdf "${DISTDIR}"/README.md
-}
diff --git a/sci-biology/CONTIGuator/metadata.xml b/sci-biology/CONTIGuator/metadata.xml
deleted file mode 100644
index 4bdff74cd..000000000
--- a/sci-biology/CONTIGuator/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="sourceforge">contiguator</remote-id>
- </upstream>
-</pkgmetadata>
^ permalink raw reply related [flat|nested] 4+ messages in thread
end of thread, other threads:[~2017-03-26 14:46 UTC | newest]
Thread overview: 4+ messages (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2014-03-23 21:18 [gentoo-commits] proj/sci:master commit in: sci-biology/CONTIGuator/ Martin Mokrejs
-- strict thread matches above, loose matches on Subject: below --
2014-09-16 0:26 Christoph Junghans
2016-03-30 21:27 Martin Mokrejs
2017-03-26 14:45 Justin Lecher
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox