* [gentoo-commits] proj/sci:master commit in: sci-biology/skewer-bin/
@ 2014-03-23 19:43 Martin Mokrejs
0 siblings, 0 replies; 3+ messages in thread
From: Martin Mokrejs @ 2014-03-23 19:43 UTC (permalink / raw
To: gentoo-commits
commit: 11b15cf806fb81c066602094002587160af5cf67
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 19:41:54 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 19:41:54 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=11b15cf8
sci-biology/skewer-bin: new package
Package-Manager: portage-2.2.7
---
sci-biology/skewer-bin/ChangeLog | 9 +++++++++
sci-biology/skewer-bin/metadata.xml | 9 +++++++++
sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild | 25 ++++++++++++++++++++++++
3 files changed, 43 insertions(+)
diff --git a/sci-biology/skewer-bin/ChangeLog b/sci-biology/skewer-bin/ChangeLog
new file mode 100644
index 0000000..a00543c
--- /dev/null
+++ b/sci-biology/skewer-bin/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/skewer-bin
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*skewer-bin-0.1.104 (23 Mar 2014)
+
+ 23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
+ +skewer-bin-0.1.104.ebuild:
+ sci-biology/skewer-bin: new package
diff --git a/sci-biology/skewer-bin/metadata.xml b/sci-biology/skewer-bin/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/skewer-bin/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
diff --git a/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild b/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild
new file mode 100644
index 0000000..23afc2e
--- /dev/null
+++ b/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+DESCRIPTION="Adaptor and MID removal / trimming tool, also for Illumina-oriented paired-end reads"
+HOMEPAGE="http://sourceforge.net/projects/skewer"
+SRC_URI="http://sourceforge.net/projects/skewer/files/Binaries/skewer-0.1.104-linux-x86_64
+ http://sourceforge.net/projects/skewer/files/Scripts/srna-scripts-0.1.2.tar.gz"
+
+LICENSE="Artistic"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+ dev-lang/perl"
+
+src_install() {
+ cp "${DISTDIR}"/skewer-* skewer || die
+ dobin *.pl || die
+ dobin skewer || die "Failed to install clview binary"
+}
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/skewer-bin/
@ 2015-04-18 0:55 Martin Mokrejs
0 siblings, 0 replies; 3+ messages in thread
From: Martin Mokrejs @ 2015-04-18 0:55 UTC (permalink / raw
To: gentoo-commits
commit: 89c4fbab6c931507632be1241520ccf840ed8761
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Apr 18 00:54:51 2015 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Apr 18 00:54:51 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=89c4fbab
sci-biology/skewer: fix typo
Package-Manager: portage-2.2.18
sci-biology/skewer-bin/ChangeLog | 6 +++++-
sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild | 4 ++--
2 files changed, 7 insertions(+), 3 deletions(-)
diff --git a/sci-biology/skewer-bin/ChangeLog b/sci-biology/skewer-bin/ChangeLog
index a00543c..a94eb4d 100644
--- a/sci-biology/skewer-bin/ChangeLog
+++ b/sci-biology/skewer-bin/ChangeLog
@@ -1,7 +1,11 @@
# ChangeLog for sci-biology/skewer-bin
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 18 Apr 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ skewer-bin-0.1.104.ebuild:
+ sci-biology/skewer: fix typo
+
*skewer-bin-0.1.104 (23 Mar 2014)
23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +metadata.xml,
diff --git a/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild b/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild
index 23afc2e..615ec11 100644
--- a/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild
+++ b/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
@@ -21,5 +21,5 @@ RDEPEND="${DEPEND}
src_install() {
cp "${DISTDIR}"/skewer-* skewer || die
dobin *.pl || die
- dobin skewer || die "Failed to install clview binary"
+ dobin skewer || die "Failed to install skewer binary"
}
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/skewer-bin/
@ 2015-09-22 8:19 Justin Lecher
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher @ 2015-09-22 8:19 UTC (permalink / raw
To: gentoo-commits
commit: f787e4bc15d1bdd48207230bcec3949b32162429
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 22 07:52:51 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Sep 22 07:52:51 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f787e4bc
sci-biology/skewer-bin: Bump to EAPI=5
Package-Manager: portage-2.2.21
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild b/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild
index c2e8984..c873326 100644
--- a/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild
+++ b/sci-biology/skewer-bin/skewer-bin-0.1.104.ebuild
@@ -2,12 +2,13 @@
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=3
+EAPI=5
DESCRIPTION="Adaptor and MID removal / trimming tool, also for Illumina-oriented paired-end reads"
HOMEPAGE="http://sourceforge.net/projects/skewer"
-SRC_URI="http://sourceforge.net/projects/skewer/files/Binaries/skewer-0.1.104-linux-x86_64
- http://sourceforge.net/projects/skewer/files/Scripts/srna-scripts-0.1.2.tar.gz"
+SRC_URI="
+ http://sourceforge.net/projects/skewer/files/Binaries/skewer-0.1.104-linux-x86_64
+ http://sourceforge.net/projects/skewer/files/Scripts/srna-scripts-0.1.2.tar.gz"
LICENSE="Artistic"
SLOT="0"
@@ -20,6 +21,5 @@ RDEPEND="${DEPEND}
src_install() {
cp "${DISTDIR}"/skewer-* skewer || die
- dobin *.pl || die
- dobin skewer || die "Failed to install skewer binary"
+ dobin *.pl skewer
}
^ permalink raw reply related [flat|nested] 3+ messages in thread
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