From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 6E5981391DB for ; Sun, 23 Mar 2014 19:19:21 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 869E0E0BD8; Sun, 23 Mar 2014 19:19:17 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 007D3E0BD8 for ; Sun, 23 Mar 2014 19:19:16 +0000 (UTC) Received: from spoonbill.gentoo.org (spoonbill.gentoo.org [81.93.255.5]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id BB48133F835 for ; Sun, 23 Mar 2014 19:19:15 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by spoonbill.gentoo.org (Postfix) with ESMTP id 42181188EA for ; Sun, 23 Mar 2014 19:19:14 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1395601870.9e9bd7a06a42132862b494a317715200c0503f19.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/artemis/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/artemis/ChangeLog sci-biology/artemis/artemis-9999.ebuild X-VCS-Directories: sci-biology/artemis/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 9e9bd7a06a42132862b494a317715200c0503f19 X-VCS-Branch: master Date: Sun, 23 Mar 2014 19:19:14 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 9021bd6d-13f4-4482-bf52-373299990902 X-Archives-Hash: 96dbbdb227b38e9ce365ff24b5c7074b commit: 9e9bd7a06a42132862b494a317715200c0503f19 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Sun Mar 23 19:11:10 2014 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Sun Mar 23 19:11:10 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9e9bd7a0 sci-biology/artemis: fixed JVM dependency, added a link to INSTALL docs Package-Manager: portage-2.2.7 --- sci-biology/artemis/ChangeLog | 4 +++- sci-biology/artemis/artemis-9999.ebuild | 6 ++++-- 2 files changed, 7 insertions(+), 3 deletions(-) diff --git a/sci-biology/artemis/ChangeLog b/sci-biology/artemis/ChangeLog index 56cbedc..4054aa1 100644 --- a/sci-biology/artemis/ChangeLog +++ b/sci-biology/artemis/ChangeLog @@ -2,6 +2,9 @@ # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 23 Mar 2014; Martin Mokrejs artemis-9999.ebuild: + sci-biology/artemis: fixed JVM dependency, added a link to INSTALL docs + 06 Jan 2014; Justin Lecher artemis-9999.ebuild, metadata.xml: Switch from git-2 to git-r3 @@ -18,4 +21,3 @@ 08 Jan 2012; Martin Mokrejs +artemis-9999.ebuild, +metadata.xml: initial, not yet working ebuild - diff --git a/sci-biology/artemis/artemis-9999.ebuild b/sci-biology/artemis/artemis-9999.ebuild index ca3ddf1..c1e6146 100644 --- a/sci-biology/artemis/artemis-9999.ebuild +++ b/sci-biology/artemis/artemis-9999.ebuild @@ -19,11 +19,13 @@ IUSE="" # uses its own BamView DEPEND=" sci-biology/samtools - >=virtual/jdk-1.5 + >=virtual/jdk-1.6 dev-java/ant-core" RDEPEND="${DEPEND} - >=virtual/jre-1.5" + >=virtual/jre-1.6" # http://www.mail-archive.com/artemis-users@sanger.ac.uk/msg00551.html # http://www.mail-archive.com/artemis-users@sanger.ac.uk/msg00561.html # http://gmod.org/wiki/Artemis-Chado_Integration_Tutorial + +# ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/artemis.pdf