From: "Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>
To: gentoo-commits@lists.gentoo.org
Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/artemis-bin/
Date: Sun, 23 Mar 2014 19:10:35 +0000 (UTC) [thread overview]
Message-ID: <1395601758.116a34b4a030050965fddb6fda334062ef424105.mmokrejs@gentoo> (raw)
commit: 116a34b4a030050965fddb6fda334062ef424105
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 19:09:18 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 19:09:18 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=116a34b4
sci-biology/artemis-bin: version bump, added a link to INSTALL docs
Package-Manager: portage-2.2.7
---
sci-biology/artemis-bin/ChangeLog | 9 +++++++--
...emis-bin-13.2.12.ebuild => artemis-bin-16.0.6.ebuild} | 16 +++++++++++++---
2 files changed, 20 insertions(+), 5 deletions(-)
diff --git a/sci-biology/artemis-bin/ChangeLog b/sci-biology/artemis-bin/ChangeLog
index 9885717..6cd5bd4 100644
--- a/sci-biology/artemis-bin/ChangeLog
+++ b/sci-biology/artemis-bin/ChangeLog
@@ -1,7 +1,13 @@
# ChangeLog for sci-biology/artemis-bin
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+*artemis-bin-16.0.6 (23 Mar 2014)
+
+ 23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +artemis-bin-16.0.6.ebuild, -artemis-bin-13.2.12.ebuild:
+ sci-biology/artemis-bin: version bump, added a link to INSTALL docs
+
03 Mar 2013; Justin Lecher <jlec@gentoo.org> artemis-bin-13.2.12.ebuild,
metadata.xml:
Clean whitespace errors
@@ -11,4 +17,3 @@
08 Jan 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+artemis-bin-13.2.12.ebuild, +metadata.xml:
initial, not yet working ebuild
-
diff --git a/sci-biology/artemis-bin/artemis-bin-13.2.12.ebuild b/sci-biology/artemis-bin/artemis-bin-16.0.6.ebuild
similarity index 51%
rename from sci-biology/artemis-bin/artemis-bin-13.2.12.ebuild
rename to sci-biology/artemis-bin/artemis-bin-16.0.6.ebuild
index fa1edc3..528d3e8 100644
--- a/sci-biology/artemis-bin/artemis-bin-13.2.12.ebuild
+++ b/sci-biology/artemis-bin/artemis-bin-16.0.6.ebuild
@@ -6,9 +6,12 @@ EAPI=3
inherit java-pkg-2
+MY_V="16"
+
DESCRIPTION="DNA sequence viewer, annotation (Artemis) and comparison (ACT) tool"
HOMEPAGE="http://www.sanger.ac.uk/resources/software/artemis"
-SRC_URI="ftp://ftp.sanger.ac.uk/pub4/resources/software/artemis/v13/v"${PV}"/artemis_compiled_v"${PV}".tar.gz"
+SRC_URI="ftp://ftp.sanger.ac.uk/pub4/resources/software/artemis/v"${MY_V}"/v"${PV}"/artemis_compiled_v"${PV}".tar.gz
+ ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/artemis.pdf"
LICENSE="GPL-2"
SLOT="0"
@@ -16,6 +19,13 @@ KEYWORDS=""
IUSE=""
DEPEND="sci-biology/samtools
- sci-biology/bamview"
+ sci-biology/bambino" # aka BamView
RDEPEND="${DEPEND}
- >=virtual/jre-1.5"
+ >=virtual/jre-1.6"
+
+src_install(){
+ dodoc artemis.pdf
+}
+
+# do not know what is the diffeerence between artemis_compiled_v16.0.6.tar.gz, artemis_v16.0.6.jar and sartemis_v16.0.6.jar
+# ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v16/v16.0.6/
next reply other threads:[~2014-03-23 19:10 UTC|newest]
Thread overview: 10+ messages / expand[flat|nested] mbox.gz Atom feed top
2014-03-23 19:10 Martin Mokrejs [this message]
-- strict thread matches above, loose matches on Subject: below --
2017-01-29 14:20 [gentoo-commits] proj/sci:master commit in: sci-biology/artemis-bin/ Justin Lecher
2016-03-30 14:26 Martin Mokrejs
2016-03-30 14:26 Martin Mokrejs
2015-06-09 10:25 Martin Mokrejs
2015-05-02 16:29 Martin Mokrejs
2015-01-08 20:03 Martin Mokrejs
2014-03-23 23:03 Martin Mokrejs
2013-03-03 17:52 Justin Lecher
2012-01-08 15:51 Martin Mokrejs
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