[gentoo-commits] proj/sci:master commit in: sci-biology/VarScan/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     e26cb1509794089cfcaf22cbead79430ad10cbcc
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 18:25:19 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 18:25:19 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e26cb150

sci-biology/VarScan: a new package with some classes and no INSTALL docs, needs help from java team for sure

---
 sci-biology/VarScan/VarScan-2.3.6.ebuild | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/sci-biology/VarScan/VarScan-2.3.6.ebuild b/sci-biology/VarScan/VarScan-2.3.6.ebuild
new file mode 100644
index 0000000..1051f71
--- /dev/null
+++ b/sci-biology/VarScan/VarScan-2.3.6.ebuild
@@ -0,0 +1,22 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit java-pkg-2
+
+DESCRIPTION="Variant detection (germline, multi-sample, somatic mutations, somatic copy number alterations (CNA)), SNP calls"
+HOMEPAGE="http://varscan.sourceforge.net/"
+SRC_URI="http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.6.jar"
+
+LICENSE="Non-profit-OSL-3.0"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="
+	>=virtual/jdk-1.5
+	dev-java/ant-core"
+RDEPEND="${DEPEND}
+	>=virtual/jre-1.5"