From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id D04F81391DB for ; Sun, 23 Mar 2014 18:20:54 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id AF25CE0B50; Sun, 23 Mar 2014 18:20:50 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 4C778E0B50 for ; Sun, 23 Mar 2014 18:20:50 +0000 (UTC) Received: from spoonbill.gentoo.org (spoonbill.gentoo.org [81.93.255.5]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 6F76933EEB4 for ; Sun, 23 Mar 2014 18:20:49 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by spoonbill.gentoo.org (Postfix) with ESMTP id 256BC188EA for ; Sun, 23 Mar 2014 18:20:48 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1395598777.65c4d36d3d13f260278569bed39a4a7a467f3468.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/fastqc/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/fastqc/ChangeLog sci-biology/fastqc/fastqc-0.10.1.ebuild X-VCS-Directories: sci-biology/fastqc/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 65c4d36d3d13f260278569bed39a4a7a467f3468 X-VCS-Branch: master Date: Sun, 23 Mar 2014 18:20:48 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: a176cc00-cb93-49f4-9d26-a5a2a4f150c1 X-Archives-Hash: 34a1bd9ebb9460058e3048b5316b6b81 commit: 65c4d36d3d13f260278569bed39a4a7a467f3468 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Sun Mar 23 18:19:37 2014 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Sun Mar 23 18:19:37 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=65c4d36d sci-biology/fastqc: reverse-engineered where sam-1.32.jar is likely coming from Package-Manager: portage-2.2.7 --- sci-biology/fastqc/ChangeLog | 5 +++++ sci-biology/fastqc/fastqc-0.10.1.ebuild | 3 ++- 2 files changed, 7 insertions(+), 1 deletion(-) diff --git a/sci-biology/fastqc/ChangeLog b/sci-biology/fastqc/ChangeLog index 69015c4..53e3150 100644 --- a/sci-biology/fastqc/ChangeLog +++ b/sci-biology/fastqc/ChangeLog @@ -2,6 +2,11 @@ # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 23 Mar 2014; Martin Mokrejs + fastqc-0.10.1.ebuild: + sci-biology/fastqc: reverse-engineered where sam-1.32.jar is likely coming + from + *fastqc-0.10.1 (23 Mar 2014) 23 Mar 2014; Martin Mokrejs diff --git a/sci-biology/fastqc/fastqc-0.10.1.ebuild b/sci-biology/fastqc/fastqc-0.10.1.ebuild index 5274554..14bd8ad 100644 --- a/sci-biology/fastqc/fastqc-0.10.1.ebuild +++ b/sci-biology/fastqc/fastqc-0.10.1.ebuild @@ -25,5 +25,6 @@ src_install(){ dobin fastqc # TODO: need to compile java in uk/ac/babraham/FastQC/ - # and decide whether jbzip2-0.9.jar and sam-1.32.jar are standard java libs and from samtools or whetehr not + # and decide whether jbzip2-0.9.jar is a standard java lib or not + # ignore the sam-1.32.jar, that is likely library already in sci-biology/picard }