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* [gentoo-commits] proj/sci:master commit in: sci-biology/fastqc/
@ 2014-03-23 17:07 Martin Mokrejs
  0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2014-03-23 17:07 UTC (permalink / raw
  To: gentoo-commits

commit:     0a17f05714124c90b425b51925dea9557a003422
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 17:05:44 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 17:05:44 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0a17f057

sci-biology/fastqc: a skeleton for a new perl wrapper calling java libs, need help

Package-Manager: portage-2.2.7

---
 sci-biology/fastqc/ChangeLog            | 10 ++++++++++
 sci-biology/fastqc/fastqc-0.10.1.ebuild | 29 +++++++++++++++++++++++++++++
 sci-biology/fastqc/metadata.xml         |  9 +++++++++
 3 files changed, 48 insertions(+)

diff --git a/sci-biology/fastqc/ChangeLog b/sci-biology/fastqc/ChangeLog
new file mode 100644
index 0000000..69015c4
--- /dev/null
+++ b/sci-biology/fastqc/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/fastqc
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*fastqc-0.10.1 (23 Mar 2014)
+
+  23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +fastqc-0.10.1.ebuild, +metadata.xml:
+  sci-biology/fastqc: a skeleton for a new perl wrapper calling java libs, need
+  help

diff --git a/sci-biology/fastqc/fastqc-0.10.1.ebuild b/sci-biology/fastqc/fastqc-0.10.1.ebuild
new file mode 100644
index 0000000..5274554
--- /dev/null
+++ b/sci-biology/fastqc/fastqc-0.10.1.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit java-pkg-2 eutils
+
+DESCRIPTION="Perl-based wrapper around java apps to quality control FASTA/FASTQ sequence files"
+HOMEPAGE="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/"
+SRC_URI="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v"${PV}"_source.zip"
+
+LICENSE="GPL-3+"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="sci-biology/picard
+	>=virtual/jrei-1.6"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/FastQC
+
+src_install(){
+	dobin fastqc
+	
+	# TODO: need to compile java in uk/ac/babraham/FastQC/
+	# and decide whether jbzip2-0.9.jar and sam-1.32.jar are standard java libs and from samtools or whetehr not
+}

diff --git a/sci-biology/fastqc/metadata.xml b/sci-biology/fastqc/metadata.xml
new file mode 100644
index 0000000..07b5255
--- /dev/null
+++ b/sci-biology/fastqc/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-biology</herd>
+	<maintainer>
+		<email>mmokrejs@fold.natur.cuni.cz</email>
+		<name>Martin Mokrejs</name>
+	</maintainer>
+</pkgmetadata>


^ permalink raw reply related	[flat|nested] 8+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/fastqc/
@ 2014-03-23 18:20 Martin Mokrejs
  0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2014-03-23 18:20 UTC (permalink / raw
  To: gentoo-commits

commit:     65c4d36d3d13f260278569bed39a4a7a467f3468
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 23 18:19:37 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 23 18:19:37 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=65c4d36d

sci-biology/fastqc: reverse-engineered where sam-1.32.jar is likely coming from

Package-Manager: portage-2.2.7

---
 sci-biology/fastqc/ChangeLog            | 5 +++++
 sci-biology/fastqc/fastqc-0.10.1.ebuild | 3 ++-
 2 files changed, 7 insertions(+), 1 deletion(-)

diff --git a/sci-biology/fastqc/ChangeLog b/sci-biology/fastqc/ChangeLog
index 69015c4..53e3150 100644
--- a/sci-biology/fastqc/ChangeLog
+++ b/sci-biology/fastqc/ChangeLog
@@ -2,6 +2,11 @@
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  fastqc-0.10.1.ebuild:
+  sci-biology/fastqc: reverse-engineered where sam-1.32.jar is likely coming
+  from
+
 *fastqc-0.10.1 (23 Mar 2014)
 
   23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

diff --git a/sci-biology/fastqc/fastqc-0.10.1.ebuild b/sci-biology/fastqc/fastqc-0.10.1.ebuild
index 5274554..14bd8ad 100644
--- a/sci-biology/fastqc/fastqc-0.10.1.ebuild
+++ b/sci-biology/fastqc/fastqc-0.10.1.ebuild
@@ -25,5 +25,6 @@ src_install(){
 	dobin fastqc
 	
 	# TODO: need to compile java in uk/ac/babraham/FastQC/
-	# and decide whether jbzip2-0.9.jar and sam-1.32.jar are standard java libs and from samtools or whetehr not
+	# and decide whether jbzip2-0.9.jar is a standard java lib or not
+	# ignore the sam-1.32.jar, that is likely library already in sci-biology/picard
 }


^ permalink raw reply related	[flat|nested] 8+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/fastqc/
@ 2014-09-16 17:01 Christoph Junghans
  0 siblings, 0 replies; 8+ messages in thread
From: Christoph Junghans @ 2014-09-16 17:01 UTC (permalink / raw
  To: gentoo-commits

commit:     fccbe4ab6a6127316bae390bb0c9d6096e6fd2d5
Author:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 16 16:20:18 2014 +0000
Commit:     Christoph Junghans <ottxor <AT> gentoo <DOT> org>
CommitDate: Tue Sep 16 16:20:18 2014 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=fccbe4ab

clean up

Package-Manager: portage-2.2.8-r1

---
 sci-biology/fastqc/ChangeLog            | 3 +++
 sci-biology/fastqc/fastqc-0.10.1.ebuild | 2 +-
 2 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/sci-biology/fastqc/ChangeLog b/sci-biology/fastqc/ChangeLog
index 53e3150..42bae79 100644
--- a/sci-biology/fastqc/ChangeLog
+++ b/sci-biology/fastqc/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  16 Sep 2014; Christoph Junghans <ottxor@gentoo.org> fastqc-0.10.1.ebuild:
+  clean up
+
   23 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
   fastqc-0.10.1.ebuild:
   sci-biology/fastqc: reverse-engineered where sam-1.32.jar is likely coming

diff --git a/sci-biology/fastqc/fastqc-0.10.1.ebuild b/sci-biology/fastqc/fastqc-0.10.1.ebuild
index 14bd8ad..3e2b639 100644
--- a/sci-biology/fastqc/fastqc-0.10.1.ebuild
+++ b/sci-biology/fastqc/fastqc-0.10.1.ebuild
@@ -23,7 +23,7 @@ S="${WORKDIR}"/FastQC
 
 src_install(){
 	dobin fastqc
-	
+
 	# TODO: need to compile java in uk/ac/babraham/FastQC/
 	# and decide whether jbzip2-0.9.jar is a standard java lib or not
 	# ignore the sam-1.32.jar, that is likely library already in sci-biology/picard


^ permalink raw reply related	[flat|nested] 8+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/fastqc/
@ 2015-02-24 22:37 Martin Mokrejs
  0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2015-02-24 22:37 UTC (permalink / raw
  To: gentoo-commits

commit:     5fd2d15989cb1eb99579c0679c16772620be122f
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Feb 24 22:37:13 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Feb 24 22:37:13 2015 +0000
URL:        http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5fd2d159

version bump; still missing src_compile() logic

Package-Manager: portage-2.2.15

---
 sci-biology/fastqc/ChangeLog                                      | 8 +++++++-
 sci-biology/fastqc/{fastqc-0.10.1.ebuild => fastqc-0.11.2.ebuild} | 7 ++++---
 2 files changed, 11 insertions(+), 4 deletions(-)

diff --git a/sci-biology/fastqc/ChangeLog b/sci-biology/fastqc/ChangeLog
index 42bae79..6b6cbf5 100644
--- a/sci-biology/fastqc/ChangeLog
+++ b/sci-biology/fastqc/ChangeLog
@@ -1,7 +1,13 @@
 # ChangeLog for sci-biology/fastqc
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*fastqc-0.11.2 (24 Feb 2015)
+
+  24 Feb 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +fastqc-0.11.2.ebuild, -fastqc-0.10.1.ebuild:
+  version bump; still missing src_compile() logic
+
   16 Sep 2014; Christoph Junghans <ottxor@gentoo.org> fastqc-0.10.1.ebuild:
   clean up
 

diff --git a/sci-biology/fastqc/fastqc-0.10.1.ebuild b/sci-biology/fastqc/fastqc-0.11.2.ebuild
similarity index 85%
rename from sci-biology/fastqc/fastqc-0.10.1.ebuild
rename to sci-biology/fastqc/fastqc-0.11.2.ebuild
index 3e2b639..b608266 100644
--- a/sci-biology/fastqc/fastqc-0.10.1.ebuild
+++ b/sci-biology/fastqc/fastqc-0.11.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
@@ -16,13 +16,14 @@ KEYWORDS=""
 IUSE=""
 
 DEPEND="sci-biology/picard
-	>=virtual/jrei-1.6"
+	>=virtual/jre-1.5"
 RDEPEND="${DEPEND}"
 
 S="${WORKDIR}"/FastQC
 
 src_install(){
-	dobin fastqc
+	dobin fastqc run_fastqc.bat
+	dodoc README.txt RELEASE_NOTES.txt
 
 	# TODO: need to compile java in uk/ac/babraham/FastQC/
 	# and decide whether jbzip2-0.9.jar is a standard java lib or not


^ permalink raw reply related	[flat|nested] 8+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/fastqc/
@ 2015-05-30 17:51 Martin Mokrejs
  0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2015-05-30 17:51 UTC (permalink / raw
  To: gentoo-commits

commit:     59cbe00f7e3f09edbe45448df2f75cbcf2d0e0c0
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat May 30 17:50:55 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat May 30 17:50:55 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=59cbe00f

sci-biology/fastqc: version bump, added perl dependency, Apache ant-building does not work still

Package-Manager: portage-2.2.18

 sci-biology/fastqc/ChangeLog                                      | 7 +++++++
 sci-biology/fastqc/{fastqc-0.11.2.ebuild => fastqc-0.11.3.ebuild} | 8 +++++++-
 2 files changed, 14 insertions(+), 1 deletion(-)

diff --git a/sci-biology/fastqc/ChangeLog b/sci-biology/fastqc/ChangeLog
index b828a60..3510855 100644
--- a/sci-biology/fastqc/ChangeLog
+++ b/sci-biology/fastqc/ChangeLog
@@ -2,6 +2,13 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*fastqc-0.11.3 (30 May 2015)
+
+  30 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +fastqc-0.11.3.ebuild, -fastqc-0.11.2.ebuild:
+  sci-biology/fastqc: version bump, added perl dependency, Apache ant-building
+  does not work still
+
   05 Mar 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +files/build.xml,
   fastqc-0.11.2.ebuild:
   added build.xml exported by author from Eclipse IDE (it doesn't work under ant

diff --git a/sci-biology/fastqc/fastqc-0.11.2.ebuild b/sci-biology/fastqc/fastqc-0.11.3.ebuild
similarity index 82%
rename from sci-biology/fastqc/fastqc-0.11.2.ebuild
rename to sci-biology/fastqc/fastqc-0.11.3.ebuild
index dadc288..d2ae40e 100644
--- a/sci-biology/fastqc/fastqc-0.11.2.ebuild
+++ b/sci-biology/fastqc/fastqc-0.11.3.ebuild
@@ -18,6 +18,7 @@ IUSE=""
 DEPEND="sci-biology/picard
 	>=virtual/jre-1.5:*"
 RDEPEND="${DEPEND}
+	dev-lang/perl
 	>=virtual/jdk-1.5:*
 	dev-java/ant-core"
 
@@ -27,11 +28,16 @@ src_prepare(){
 	cp "${FILESDIR}"/build.xml . || die
 }
 
+src_compile(){
+	ant build || die # TODO: this does not work somehow
+}
+
 src_install(){
 	dobin fastqc run_fastqc.bat
 	dodoc README.txt RELEASE_NOTES.txt
 
 	# TODO: need to compile java in uk/ac/babraham/FastQC/
 	# and decide whether jbzip2-0.9.jar is a standard java lib or not
-	# ignore the sam-1.32.jar, that is likely library already in sci-biology/picard
+	# ignore the sam-1.103.jar, that is likely library already in sci-biology/picard
+	# cisd-jhdf5.jar
 }


^ permalink raw reply related	[flat|nested] 8+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/fastqc/
@ 2015-06-10 13:28 Martin Mokrejs
  0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2015-06-10 13:28 UTC (permalink / raw
  To: gentoo-commits

commit:     f88203259ef0c27caa76cf104f4bf851f6e012d0
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jun 10 13:27:42 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jun 10 13:27:42 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=f8820325

add dependency on jhdf5; more ebuild cleanup

Package-Manager: portage-2.2.18

 sci-biology/fastqc/ChangeLog            | 4 ++++
 sci-biology/fastqc/fastqc-0.11.3.ebuild | 7 ++++---
 2 files changed, 8 insertions(+), 3 deletions(-)

diff --git a/sci-biology/fastqc/ChangeLog b/sci-biology/fastqc/ChangeLog
index 3510855..0e247b8 100644
--- a/sci-biology/fastqc/ChangeLog
+++ b/sci-biology/fastqc/ChangeLog
@@ -2,6 +2,10 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jun 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  fastqc-0.11.3.ebuild:
+  add dependency on jhdf5; more ebuild cleanup
+
 *fastqc-0.11.3 (30 May 2015)
 
   30 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

diff --git a/sci-biology/fastqc/fastqc-0.11.3.ebuild b/sci-biology/fastqc/fastqc-0.11.3.ebuild
index d2ae40e..d934cae 100644
--- a/sci-biology/fastqc/fastqc-0.11.3.ebuild
+++ b/sci-biology/fastqc/fastqc-0.11.3.ebuild
@@ -16,6 +16,7 @@ KEYWORDS=""
 IUSE=""
 
 DEPEND="sci-biology/picard
+	sci-libs/jhdf5
 	>=virtual/jre-1.5:*"
 RDEPEND="${DEPEND}
 	dev-lang/perl
@@ -29,7 +30,7 @@ src_prepare(){
 }
 
 src_compile(){
-	ant build || die # TODO: this does not work somehow
+	ant || die
 }
 
 src_install(){
@@ -38,6 +39,6 @@ src_install(){
 
 	# TODO: need to compile java in uk/ac/babraham/FastQC/
 	# and decide whether jbzip2-0.9.jar is a standard java lib or not
-	# ignore the sam-1.103.jar, that is likely library already in sci-biology/picard
-	# cisd-jhdf5.jar
+	# ignore the sam-1.103.jar and rely on /usr/share/picard/lib/sam.jar from sci-biology/picard
+	# cisd-jhdf5.jar should be provided by sci-libs/jhdf5
 }


^ permalink raw reply related	[flat|nested] 8+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/fastqc/
@ 2015-06-10 13:34 Martin Mokrejs
  0 siblings, 0 replies; 8+ messages in thread
From: Martin Mokrejs @ 2015-06-10 13:34 UTC (permalink / raw
  To: gentoo-commits

commit:     ce7e04bde51f3c7a2a711812dfeb991400f8baa0
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Jun 10 13:33:49 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Jun 10 13:33:49 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ce7e04bd

more comments on the external dependencies

Package-Manager: portage-2.2.18

 sci-biology/fastqc/ChangeLog            |  4 ++++
 sci-biology/fastqc/fastqc-0.11.3.ebuild | 15 +++++++++++++--
 2 files changed, 17 insertions(+), 2 deletions(-)

diff --git a/sci-biology/fastqc/ChangeLog b/sci-biology/fastqc/ChangeLog
index 0e247b8..cd180e7 100644
--- a/sci-biology/fastqc/ChangeLog
+++ b/sci-biology/fastqc/ChangeLog
@@ -4,6 +4,10 @@
 
   10 Jun 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
   fastqc-0.11.3.ebuild:
+  more comments on the external dependencies
+
+  10 Jun 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  fastqc-0.11.3.ebuild:
   add dependency on jhdf5; more ebuild cleanup
 
 *fastqc-0.11.3 (30 May 2015)

diff --git a/sci-biology/fastqc/fastqc-0.11.3.ebuild b/sci-biology/fastqc/fastqc-0.11.3.ebuild
index d934cae..7c8cb9e 100644
--- a/sci-biology/fastqc/fastqc-0.11.3.ebuild
+++ b/sci-biology/fastqc/fastqc-0.11.3.ebuild
@@ -37,8 +37,19 @@ src_install(){
 	dobin fastqc run_fastqc.bat
 	dodoc README.txt RELEASE_NOTES.txt
 
-	# TODO: need to compile java in uk/ac/babraham/FastQC/
-	# and decide whether jbzip2-0.9.jar is a standard java lib or not
+	# There is no fastqc.jar.  The output from the compilation is the set of
+	# .class files (a jar file is just a zip file full of .class files).  All
+	# you need to copy out is the contents of the bin subdirectory, the rest of
+	# the download you can discard.
+	# 
+	# jbzip2-0.9.jar comes from https://code.google.com/p/jbzip2
+	#
 	# ignore the sam-1.103.jar and rely on /usr/share/picard/lib/sam.jar from sci-biology/picard
+	# The sam-1.103.jar library comes from
+	# http://sourceforge.net/projects/picard/files/sam-jdk/.  Note that there is
+	# a newer version of this codebase at https://github.com/samtools/htsjdk but
+	# that FastQC is NOT yet compatible with the updated API (this will probably
+	# happen in a future release).  This library is needed to read SAM/BAM
+	# format files.
 	# cisd-jhdf5.jar should be provided by sci-libs/jhdf5
 }


^ permalink raw reply related	[flat|nested] 8+ messages in thread

* [gentoo-commits] proj/sci:master commit in: sci-biology/fastqc/
@ 2022-01-15 14:38 Andrew Ammerlaan
  0 siblings, 0 replies; 8+ messages in thread
From: Andrew Ammerlaan @ 2022-01-15 14:38 UTC (permalink / raw
  To: gentoo-commits

commit:     98735b6ba74c5ea944506782d1781e5ea790963d
Author:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
AuthorDate: Sat Jan 15 14:35:03 2022 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org>
CommitDate: Sat Jan 15 14:35:03 2022 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=98735b6b

sci-biology/fastqc: drop useless blank line

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org>

 sci-biology/fastqc/fastqc-0.11.9.ebuild | 1 -
 1 file changed, 1 deletion(-)

diff --git a/sci-biology/fastqc/fastqc-0.11.9.ebuild b/sci-biology/fastqc/fastqc-0.11.9.ebuild
index 614e535dd..be2d3b340 100644
--- a/sci-biology/fastqc/fastqc-0.11.9.ebuild
+++ b/sci-biology/fastqc/fastqc-0.11.9.ebuild
@@ -38,4 +38,3 @@ src_install(){
 	make_desktop_entry ${PN} FastQC ${PN}
 	einstalldocs
 }
-


^ permalink raw reply related	[flat|nested] 8+ messages in thread

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