* [gentoo-commits] proj/sci:master commit in: sci-biology/conifer/
@ 2014-03-16 13:01 Martin Mokrejs
0 siblings, 0 replies; 3+ messages in thread
From: Martin Mokrejs @ 2014-03-16 13:01 UTC (permalink / raw
To: gentoo-commits
commit: f0acd63b0abac8ae54d1084f23a426134cef7c28
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 16 12:59:28 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Mar 16 12:59:28 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f0acd63b
sci-biology/conifer: new package
Package-Manager: portage-2.2.7
---
sci-biology/conifer/ChangeLog | 9 +++++++++
sci-biology/conifer/conifer-0.2.2.ebuild | 25 +++++++++++++++++++++++++
sci-biology/conifer/metadata.xml | 9 +++++++++
3 files changed, 43 insertions(+)
diff --git a/sci-biology/conifer/ChangeLog b/sci-biology/conifer/ChangeLog
new file mode 100644
index 0000000..bfb4794
--- /dev/null
+++ b/sci-biology/conifer/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/conifer
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*conifer-0.2.2 (16 Mar 2014)
+
+ 16 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +conifer-0.2.2.ebuild, +metadata.xml:
+ sci-biology/conifer: new package
diff --git a/sci-biology/conifer/conifer-0.2.2.ebuild b/sci-biology/conifer/conifer-0.2.2.ebuild
new file mode 100644
index 0000000..8b012df
--- /dev/null
+++ b/sci-biology/conifer/conifer-0.2.2.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7} )
+
+DESCRIPTION="Copy Number Inference/Variants (CNV) from exome reads"
+HOMEPAGE="http://conifer.sf.net"
+SRC_URI="http://downloads.sourceforge.net/project/conifer/CoNIFER%200.2.2/conifer_v0.2.2.tar.gz"
+
+LICENSE="GPL-3+"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/"${PN}"_v"${PV}"
+
+src_install(){
+ dobin *.py
+}
diff --git a/sci-biology/conifer/metadata.xml b/sci-biology/conifer/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/conifer/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/conifer/
@ 2014-03-22 9:45 Justin Lecher
0 siblings, 0 replies; 3+ messages in thread
From: Justin Lecher @ 2014-03-22 9:45 UTC (permalink / raw
To: gentoo-commits
commit: 8812b7d491fd83c984db309dfcfa09e7f9506ebc
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Mar 16 12:59:28 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Sat Mar 22 09:44:40 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=8812b7d4
sci-biology/conifer: new package
Package-Manager: portage-2.2.7
---
sci-biology/conifer/ChangeLog | 9 +++++++++
sci-biology/conifer/conifer-0.2.2.ebuild | 25 +++++++++++++++++++++++++
sci-biology/conifer/metadata.xml | 9 +++++++++
3 files changed, 43 insertions(+)
diff --git a/sci-biology/conifer/ChangeLog b/sci-biology/conifer/ChangeLog
new file mode 100644
index 0000000..bfb4794
--- /dev/null
+++ b/sci-biology/conifer/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/conifer
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*conifer-0.2.2 (16 Mar 2014)
+
+ 16 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +conifer-0.2.2.ebuild, +metadata.xml:
+ sci-biology/conifer: new package
diff --git a/sci-biology/conifer/conifer-0.2.2.ebuild b/sci-biology/conifer/conifer-0.2.2.ebuild
new file mode 100644
index 0000000..8b012df
--- /dev/null
+++ b/sci-biology/conifer/conifer-0.2.2.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7} )
+
+DESCRIPTION="Copy Number Inference/Variants (CNV) from exome reads"
+HOMEPAGE="http://conifer.sf.net"
+SRC_URI="http://downloads.sourceforge.net/project/conifer/CoNIFER%200.2.2/conifer_v0.2.2.tar.gz"
+
+LICENSE="GPL-3+"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/"${PN}"_v"${PV}"
+
+src_install(){
+ dobin *.py
+}
diff --git a/sci-biology/conifer/metadata.xml b/sci-biology/conifer/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/conifer/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/conifer/
@ 2021-02-13 11:11 Andrew Ammerlaan
0 siblings, 0 replies; 3+ messages in thread
From: Andrew Ammerlaan @ 2021-02-13 11:11 UTC (permalink / raw
To: gentoo-commits
commit: 0624beda9f429fc5cce9f70f732159bed9eb5e34
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Feb 13 11:11:15 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Feb 13 11:11:15 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=0624beda
sci-biology/conifer: drop pack, py2 only, last update 2012
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-biology/conifer/conifer-0.2.2.ebuild | 24 ------------------------
sci-biology/conifer/metadata.xml | 15 ---------------
2 files changed, 39 deletions(-)
diff --git a/sci-biology/conifer/conifer-0.2.2.ebuild b/sci-biology/conifer/conifer-0.2.2.ebuild
deleted file mode 100644
index ebfacd387..000000000
--- a/sci-biology/conifer/conifer-0.2.2.ebuild
+++ /dev/null
@@ -1,24 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-
-DESCRIPTION="Copy Number Inference/Variants (CNV) from exome reads"
-HOMEPAGE="http://conifer.sf.net"
-SRC_URI="http://downloads.sourceforge.net/project/conifer/CoNIFER%200.2.2/conifer_v0.2.2.tar.gz"
-
-LICENSE="GPL-3+"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-
-DEPEND=""
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}"/"${PN}"_v"${PV}"
-
-src_install(){
- dobin *.py
-}
diff --git a/sci-biology/conifer/metadata.xml b/sci-biology/conifer/metadata.xml
deleted file mode 100644
index 0f267b755..000000000
--- a/sci-biology/conifer/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="person">
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <upstream>
- <remote-id type="sourceforge">downloads</remote-id>
- </upstream>
-</pkgmetadata>
^ permalink raw reply related [flat|nested] 3+ messages in thread
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