* [gentoo-commits] proj/sci:master commit in: sci-libs/pmx/
@ 2014-01-09 22:01 Reinis Danne
0 siblings, 0 replies; 5+ messages in thread
From: Reinis Danne @ 2014-01-09 22:01 UTC (permalink / raw
To: gentoo-commits
commit: 0b2850fab6f2263a90fafb5496706f891d837aeb
Author: Reinis Danne <rei4dan <AT> gmail <DOT> com>
AuthorDate: Thu Jan 9 22:00:17 2014 +0000
Commit: Reinis Danne <rei4dan <AT> gmail <DOT> com>
CommitDate: Thu Jan 9 22:00:17 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0b2850fa
Add sci-libs/pmx
---
sci-libs/pmx/ChangeLog | 10 ++++++++++
sci-libs/pmx/metadata.xml | 13 +++++++++++++
sci-libs/pmx/pmx-9999.ebuild | 26 ++++++++++++++++++++++++++
3 files changed, 49 insertions(+)
diff --git a/sci-libs/pmx/ChangeLog b/sci-libs/pmx/ChangeLog
new file mode 100644
index 0000000..0cb571f
--- /dev/null
+++ b/sci-libs/pmx/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-libs/pmx
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*pmx-9999 (09 Jan 2014)
+
+ 09 Jan 2014; Reinis Danne <rei4dan@gmail.com> +pmx-9999.ebuild,
+ +metadata.xml:
+ New ebuild.
+
diff --git a/sci-libs/pmx/metadata.xml b/sci-libs/pmx/metadata.xml
new file mode 100644
index 0000000..ae81f58
--- /dev/null
+++ b/sci-libs/pmx/metadata.xml
@@ -0,0 +1,13 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-chemistry</herd>
+ <longdescription>
+ pmx (formerly pymacs) has started as a small bunch of classes to read
+ structure files such as pdb or gro and trajectory data in gromacs xtc
+ format. Over the years it has been extended towards a versatile (bio-)
+ molecular structure manipulation package with some additional
+ functionalities, e.g. gromacs file parsers and scripts for setup and
+ analysis of free energy calculations.
+ </longdescription>
+</pkgmetadata>
diff --git a/sci-libs/pmx/pmx-9999.ebuild b/sci-libs/pmx/pmx-9999.ebuild
new file mode 100644
index 0000000..2d073e4
--- /dev/null
+++ b/sci-libs/pmx/pmx-9999.ebuild
@@ -0,0 +1,26 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7} )
+
+inherit eutils distutils-r1 git-r3
+
+DESCRIPTION="Python library to read PDB, GRO or Gromacs XTC files"
+HOMEPAGE="http://code.google.com/p/pmx"
+EGIT_REPO_URI="https://code.google.com/p/${PN}.git"
+EGIT_NONSHALLOW=true
+
+LICENSE="LGPL-3"
+SLOT="0"
+IUSE=""
+
+DEPEND="${DEPEND}
+ sci-chemistry/gromacs
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ "
+
+RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/pmx/
@ 2014-03-06 11:11 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2014-03-06 11:11 UTC (permalink / raw
To: gentoo-commits
commit: 71d9e260cb16cb8fde984eadcd914cb2d05f4d0b
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Mar 6 11:10:19 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Mar 6 11:10:19 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=71d9e260
sci-libs/pmx: Adopt to recent changes in git-r3.eclass
Package-Manager: portage-2.2.8-r1
---
sci-libs/pmx/ChangeLog | 3 +++
sci-libs/pmx/pmx-9999.ebuild | 12 +++++-------
2 files changed, 8 insertions(+), 7 deletions(-)
diff --git a/sci-libs/pmx/ChangeLog b/sci-libs/pmx/ChangeLog
index 0cb571f..9121c20 100644
--- a/sci-libs/pmx/ChangeLog
+++ b/sci-libs/pmx/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 06 Mar 2014; Justin Lecher <jlec@gentoo.org> pmx-9999.ebuild:
+ Adopt to recent changes in git-r3.eclass
+
*pmx-9999 (09 Jan 2014)
09 Jan 2014; Reinis Danne <rei4dan@gmail.com> +pmx-9999.ebuild,
diff --git a/sci-libs/pmx/pmx-9999.ebuild b/sci-libs/pmx/pmx-9999.ebuild
index 2d073e4..fe50df5 100644
--- a/sci-libs/pmx/pmx-9999.ebuild
+++ b/sci-libs/pmx/pmx-9999.ebuild
@@ -11,16 +11,14 @@ inherit eutils distutils-r1 git-r3
DESCRIPTION="Python library to read PDB, GRO or Gromacs XTC files"
HOMEPAGE="http://code.google.com/p/pmx"
EGIT_REPO_URI="https://code.google.com/p/${PN}.git"
-EGIT_NONSHALLOW=true
LICENSE="LGPL-3"
SLOT="0"
IUSE=""
-DEPEND="${DEPEND}
- sci-chemistry/gromacs
- sci-libs/scipy[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- "
-
+DEPEND="
+ sci-chemistry/gromacs
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ "
RDEPEND="${DEPEND}"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/pmx/
@ 2016-04-06 10:27 Alexey Shvetsov
0 siblings, 0 replies; 5+ messages in thread
From: Alexey Shvetsov @ 2016-04-06 10:27 UTC (permalink / raw
To: gentoo-commits
commit: ffca79a7d20849dd048231b8400065dd6609dcfc
Author: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
AuthorDate: Wed Apr 6 10:27:24 2016 +0000
Commit: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
CommitDate: Wed Apr 6 10:27:24 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ffca79a7
sci-libs/pmx: change repo uri. its on github since 2015
Package-Manager: portage-2.2.28
sci-libs/pmx/pmx-9999.ebuild | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/sci-libs/pmx/pmx-9999.ebuild b/sci-libs/pmx/pmx-9999.ebuild
index 3ecdda8..e2e80f9 100644
--- a/sci-libs/pmx/pmx-9999.ebuild
+++ b/sci-libs/pmx/pmx-9999.ebuild
@@ -1,16 +1,16 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
-EAPI=5
+EAPI=6
PYTHON_COMPAT=( python2_7 )
inherit eutils distutils-r1 git-r3
DESCRIPTION="Python library to read PDB, GRO or Gromacs XTC files"
-HOMEPAGE="http://code.google.com/p/pmx"
-EGIT_REPO_URI="https://code.google.com/p/${PN}.git"
+HOMEPAGE="https://github.com/dseeliger/pmx"
+EGIT_REPO_URI="https://github.com/dseeliger/${PN}.git"
LICENSE="LGPL-3"
SLOT="0"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/pmx/
@ 2019-01-14 10:42 Alexey Shvetsov
0 siblings, 0 replies; 5+ messages in thread
From: Alexey Shvetsov @ 2019-01-14 10:42 UTC (permalink / raw
To: gentoo-commits
commit: bd4d3697bd6326906f13dbec916c60d6d692c043
Author: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 14 10:42:09 2019 +0000
Commit: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org>
CommitDate: Mon Jan 14 10:42:09 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=bd4d3697
sci-libs/pmx: Now upstream is https://github.com/deGrootLab/pmx
Package-Manager: Portage-2.3.55, Repoman-2.3.12
Signed-off-by: Alexey Shvetsov <alexxy <AT> gentoo.org>
sci-libs/pmx/pmx-9999.ebuild | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/sci-libs/pmx/pmx-9999.ebuild b/sci-libs/pmx/pmx-9999.ebuild
index 7ba883677..dc1708491 100644
--- a/sci-libs/pmx/pmx-9999.ebuild
+++ b/sci-libs/pmx/pmx-9999.ebuild
@@ -1,15 +1,15 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
PYTHON_COMPAT=( python2_7 )
inherit eutils distutils-r1 git-r3
DESCRIPTION="Python library to read PDB, GRO or Gromacs XTC files"
-HOMEPAGE="https://github.com/dseeliger/pmx"
-EGIT_REPO_URI="https://github.com/dseeliger/${PN}.git"
+HOMEPAGE="https://github.com/deGrootLab/pmx"
+EGIT_REPO_URI="https://github.com/deGrootLab/${PN}.git"
LICENSE="LGPL-3"
SLOT="0"
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-libs/pmx/
@ 2021-01-05 18:05 Andrew Ammerlaan
0 siblings, 0 replies; 5+ messages in thread
From: Andrew Ammerlaan @ 2021-01-05 18:05 UTC (permalink / raw
To: gentoo-commits
commit: ff9558b45284913348542ee252b84c193bae15fe
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Jan 5 15:03:32 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Jan 5 18:05:26 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ff9558b4
sci-libs/pmx: drop pack, py2 only
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
sci-libs/pmx/metadata.xml | 19 -------------------
sci-libs/pmx/pmx-9999.ebuild | 23 -----------------------
2 files changed, 42 deletions(-)
diff --git a/sci-libs/pmx/metadata.xml b/sci-libs/pmx/metadata.xml
deleted file mode 100644
index 81b693168..000000000
--- a/sci-libs/pmx/metadata.xml
+++ /dev/null
@@ -1,19 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-chemistry@gentoo.org</email>
- <name>Gentoo Chemistry Project</name>
- </maintainer>
- <longdescription>
-pmx (formerly pymacs) has started as a small bunch of classes to read
-structure files such as pdb or gro and trajectory data in gromacs xtc
-format. Over the years it has been extended towards a versatile (bio-)
-molecular structure manipulation package with some additional
-functionalities, e.g. gromacs file parsers and scripts for setup and
-analysis of free energy calculations.
-</longdescription>
- <upstream>
- <remote-id type="github">dseeliger/pmx</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-libs/pmx/pmx-9999.ebuild b/sci-libs/pmx/pmx-9999.ebuild
deleted file mode 100644
index 3ba7fda68..000000000
--- a/sci-libs/pmx/pmx-9999.ebuild
+++ /dev/null
@@ -1,23 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit eutils distutils-r1 git-r3
-
-DESCRIPTION="Python library to read PDB, GRO or Gromacs XTC files"
-HOMEPAGE="https://github.com/deGrootLab/pmx"
-EGIT_REPO_URI="https://github.com/deGrootLab/${PN}.git"
-
-LICENSE="LGPL-3"
-SLOT="0"
-IUSE=""
-
-DEPEND="
- sci-chemistry/gromacs
- dev-python/scipy[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- "
-RDEPEND="${DEPEND}"
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