From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 076AB138247 for ; Mon, 6 Jan 2014 19:27:13 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id AAC37E0B61; Mon, 6 Jan 2014 19:27:11 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 0FEEEE0B44 for ; Mon, 6 Jan 2014 19:27:11 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id F2E0C33F64F for ; Mon, 6 Jan 2014 19:27:09 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id 74BF4E5536 for ; Mon, 6 Jan 2014 19:27:07 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1389034882.ad690538196efa3671c800664cab5b808cf9690c.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/bamtools/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/bamtools/ChangeLog sci-biology/bamtools/bamtools-9999.ebuild sci-biology/bamtools/metadata.xml X-VCS-Directories: sci-biology/bamtools/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: ad690538196efa3671c800664cab5b808cf9690c X-VCS-Branch: master Date: Mon, 6 Jan 2014 19:27:07 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: fcd58bad-a575-47b2-a98b-0a10c4df8446 X-Archives-Hash: 74e9227693df166dcf4bef68ae40ee3c commit: ad690538196efa3671c800664cab5b808cf9690c Author: Justin Lecher gentoo org> AuthorDate: Mon Jan 6 19:01:22 2014 +0000 Commit: Justin Lecher gentoo org> CommitDate: Mon Jan 6 19:01:22 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ad690538 sci-biology/bamtools: Switch from git-2 to git-r3 Package-Manager: portage-2.2.8 --- sci-biology/bamtools/ChangeLog | 6 +++++- sci-biology/bamtools/bamtools-9999.ebuild | 10 ++++------ sci-biology/bamtools/metadata.xml | 12 ++++++------ 3 files changed, 15 insertions(+), 13 deletions(-) diff --git a/sci-biology/bamtools/ChangeLog b/sci-biology/bamtools/ChangeLog index 6ff7212..8afcd01 100644 --- a/sci-biology/bamtools/ChangeLog +++ b/sci-biology/bamtools/ChangeLog @@ -1,7 +1,11 @@ # ChangeLog for sci-biology/bamtools -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 06 Jan 2014; Justin Lecher bamtools-9999.ebuild, + metadata.xml: + Switch from git-2 to git-r3 + 09 Nov 2012; Justin Lecher -bamtools-1.0.2.ebuild, bamtools-9999.ebuild: Drop tree version, merge changes into live version diff --git a/sci-biology/bamtools/bamtools-9999.ebuild b/sci-biology/bamtools/bamtools-9999.ebuild index b92abe0..575b69a 100644 --- a/sci-biology/bamtools/bamtools-9999.ebuild +++ b/sci-biology/bamtools/bamtools-9999.ebuild @@ -1,13 +1,14 @@ -# Copyright 1999-2012 Gentoo Foundation +# Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ -EAPI=4 +EAPI=5 -inherit cmake-utils git-2 +inherit cmake-utils git-r3 DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files" HOMEPAGE="https://github.com/pezmaster31/bamtools" +SRC_URI="" EGIT_REPO_URI="https://github.com/pezmaster31/bamtools.git" LICENSE="MIT" @@ -15,9 +16,6 @@ SLOT="0" KEYWORDS="" IUSE="" -DEPEND="sys-libs/zlib" -RDEPEND="${DEPEND}" - S="${WORKDIR}"/src src_install() { diff --git a/sci-biology/bamtools/metadata.xml b/sci-biology/bamtools/metadata.xml index e10e621..e304b12 100644 --- a/sci-biology/bamtools/metadata.xml +++ b/sci-biology/bamtools/metadata.xml @@ -1,10 +1,10 @@ - sci-biology - - mmokrejs@fold.natur.cuni.cz - Martin Mokrejs - - BAM (Binary Alignment/Map) format is useful for storing large DNA sequence alignments. It is closely related to the text-based SAM format, but optimized for random-access. BamTools provides a fast, flexible C++ API for reading and writing BAM files. + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + + BAM (Binary Alignment/Map) format is useful for storing large DNA sequence alignments. It is closely related to the text-based SAM format, but optimized for random-access. BamTools provides a fast, flexible C++ API for reading and writing BAM files.