[gentoo-commits] proj/sci:master commit in: sci-biology/mrsfast/

["Justin Lecher" <jlec@gentoo.org>]

commit:     4e0c2e6cf7939232a30f579b0b742f5055285733
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jan  6 16:21:05 2014 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jan  6 16:21:05 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4e0c2e6c

sci-biology/mrsfast: Version BUmp; punt base.eclass

Package-Manager: portage-2.2.8

---
 sci-biology/mrsfast/ChangeLog              |  8 ++++++++
 sci-biology/mrsfast/metadata.xml           | 10 +++++-----
 sci-biology/mrsfast/mrsfast-2.3.0.2.ebuild | 30 ------------------------------
 sci-biology/mrsfast/mrsfast-2.6.0.4.ebuild | 29 +++++++++++++++++++++++++++++
 4 files changed, 42 insertions(+), 35 deletions(-)

diff --git a/sci-biology/mrsfast/ChangeLog b/sci-biology/mrsfast/ChangeLog
new file mode 100644
index 0000000..18488f4
--- /dev/null
+++ b/sci-biology/mrsfast/ChangeLog
@@ -0,0 +1,8 @@
+# ChangeLog for sci-biology/mrsfast
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  06 Jan 2014; Justin Lecher <jlec@gentoo.org> -mrsfast-2.3.0.2.ebuild,
+  +mrsfast-2.6.0.4.ebuild, metadata.xml:
+  Version BUmp; punt base.eclass
+

diff --git a/sci-biology/mrsfast/metadata.xml b/sci-biology/mrsfast/metadata.xml
index 3302123..fc7c769 100644
--- a/sci-biology/mrsfast/metadata.xml
+++ b/sci-biology/mrsfast/metadata.xml
@@ -1,9 +1,9 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-	<maintainer>
-		<email>weaver@gentoo.org</email>
-		<name>Andrey Kislyuk</name>
-	</maintainer>
-	<herd>sci-biology</herd>
+  <maintainer>
+    <email>weaver@gentoo.org</email>
+    <name>Andrey Kislyuk</name>
+  </maintainer>
+  <herd>sci-biology</herd>
 </pkgmetadata>

diff --git a/sci-biology/mrsfast/mrsfast-2.3.0.2.ebuild b/sci-biology/mrsfast/mrsfast-2.3.0.2.ebuild
deleted file mode 100644
index 505aaeb..0000000
--- a/sci-biology/mrsfast/mrsfast-2.3.0.2.ebuild
+++ /dev/null
@@ -1,30 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/amos-2.0.8-r1.ebuild,v 1.1 2010/02/11 16:47:31 weaver Exp $
-
-EAPI=4
-
-inherit base
-
-DESCRIPTION="Micro Read Fast Alignment Search Tool"
-HOMEPAGE="http://mrfast.sourceforge.net/"
-SRC_URI="mirror://sourceforge/mrfast/mrsfast/${PV}/${P}.zip"
-
-LICENSE="BSD"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64"
-
-DEPEND=""
-RDEPEND=""
-
-PATCHES=("${FILESDIR}"/${P}-*.patch)
-
-src_prepare() {
-#	base_src_prepare
-	sed -i -e 's/CFLAGS =/CFLAGS +=/' -e 's/LDFLAGS =/LDFLAGS +=/' Makefile
-}
-
-src_install() {
-	dobin mrsfast
-}

diff --git a/sci-biology/mrsfast/mrsfast-2.6.0.4.ebuild b/sci-biology/mrsfast/mrsfast-2.6.0.4.ebuild
new file mode 100644
index 0000000..568d217
--- /dev/null
+++ b/sci-biology/mrsfast/mrsfast-2.6.0.4.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/amos-2.0.8-r1.ebuild,v 1.1 2010/02/11 16:47:31 weaver Exp $
+
+EAPI=5
+
+inherit eutils toolchain-funcs
+
+DESCRIPTION="Micro Read Fast Alignment Search Tool"
+HOMEPAGE="http://mrsfast.sourceforge.net/Home"
+SRC_URI="mirror://sourceforge/mrsfast/${PV}/${P}.zip"
+
+LICENSE="BSD"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64"
+
+src_prepare() {
+	sed \
+		-e "s:gcc:$(tc-getCC) ${LDFLAGS}:g" \
+		-e '/^CFLAGS/d' \
+		-e '/^LDFLAGS/d' \
+		-i Makefile || die
+	tc-export CC
+}
+
+src_install() {
+	dobin ${PN}
+}