[gentoo-commits] proj/sci:master commit in: sci-chemistry/nwchem/

["Honza Macháček" <Hloupy.Honza@centrum.cz>]

commit:     2be8036b0623d27fa5356de6a8e79ff97e7a9e0e
Author:     Honza Macháček <Hloupy.Honza <AT> centrum <DOT> cz>
AuthorDate: Sat Oct 19 06:18:33 2013 +0000
Commit:     Honza Macháček <Hloupy.Honza <AT> centrum <DOT> cz>
CommitDate: Sat Oct 19 06:18:33 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2be8036b

sci-chemistry/nwchem updated to 6.3 revision 2. The source directory name shortened to fit under the length restrictions in the makefiles. Arranged for the TeX fonts creation in the sandbox.

Package-Manager: portage-2.2.7

---
 sci-chemistry/nwchem/ChangeLog            |   8 ++
 sci-chemistry/nwchem/nwchem-6.3-r2.ebuild | 157 ++++++++++++++++++++++++++++++
 2 files changed, 165 insertions(+)

diff --git a/sci-chemistry/nwchem/ChangeLog b/sci-chemistry/nwchem/ChangeLog
index 1f80267..d710a50 100644
--- a/sci-chemistry/nwchem/ChangeLog
+++ b/sci-chemistry/nwchem/ChangeLog
@@ -2,6 +2,14 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*nwchem-6.3-r2 (19 Oct 2013)
+
+  19 Oct 2013; Honza Macháček <Hloupy.Honza@centrum.cz>
+  +nwchem-6.3-r2.ebuild:
+  Updated to 6.3 revision 2. The source directory name shortened to fit under
+  the length restrictions in the makefiles. Arranged for the TeX fonts creation
+  in the sandbox.
+
 *nwchem-6.3-r1 (23 Jul 2013)
 
   23 Jul 2013; Honza Macháček <Hloupy.Honza@centrum.cz> -nwchem-6.3.ebuild,

diff --git a/sci-chemistry/nwchem/nwchem-6.3-r2.ebuild b/sci-chemistry/nwchem/nwchem-6.3-r2.ebuild
new file mode 100644
index 0000000..8a8e3d4
--- /dev/null
+++ b/sci-chemistry/nwchem/nwchem-6.3-r2.ebuild
@@ -0,0 +1,157 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7} )
+
+inherit eutils fortran-2 multilib python-single-r1 toolchain-funcs
+
+DATE="2013-10-17"
+
+DESCRIPTION="Delivering High-Performance Computational Chemistry to Science"
+HOMEPAGE="http://www.nwchem-sw.org/index.php/Main_Page"
+SRC_URI="http://www.nwchem-sw.org/images/Nwchem-${PV}.revision${PR#r}-src.${DATE}.tar.gz"
+
+LICENSE="ECL-2.0"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE="mpi doc examples nwchem-tests python"
+
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+
+RDEPEND="
+	sys-fs/sysfsutils
+	python? ( ${PYTHON_DEPS} )"
+DEPEND="${RDEPEND}
+	app-shells/tcsh
+	mpi? ( virtual/mpi[fortran] )
+	doc? (
+		dev-texlive/texlive-latex
+		dev-tex/latex2html )"
+
+LONG_S="${WORKDIR}/${P}.revision${PR#r}-src.${DATE}"
+S="${WORKDIR}/${PN}"
+
+pkg_setup() {
+	fortran-2_pkg_setup
+	use python && python-single-r1_pkg_setup
+}
+
+src_unpack() {
+	unpack "${A}"
+	mv "${LONG_S}" "${S}"
+}
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/nwchem-6.1.1-makefile.patch \
+		"${FILESDIR}"/nwchem-6.1.1-nwchemrc.patch \
+		"${FILESDIR}"/nwchem-6.1.1-adjust-dir-length.patch
+	use python && epatch "${FILESDIR}"/nwchem-6.1.1-python_makefile.patch
+	use doc && epatch "${FILESDIR}"/nwchem-6.3-r1-html_doc.patch
+
+	sed \
+		-e "s:DBASIS_LIBRARY=\"'\$(SRCDIR)'\":DBASIS_LIBRARY=\"'${EPREFIX}/usr/share/NWChem'\":g" \
+		-i src/basis/MakeFile src/basis/GNUmakefile || die
+	sed \
+		-e "s:DNWPW_LIBRARY=\"'\$(SRCDIR)'\":DNWPW_LIBRARY=\"'${EPREFIX}/usr/share/NWChem'\":g" \
+		-i src/nwpw/libraryps/GNUmakefile || die
+	sed \
+		-e "s:-DCOMPILATION_DIR=\"'\$(TOPDIR)'\":-DCOMPILATION_DIR=\"''\":g" \
+		-i src/GNUmakefile src/MakeFile || die
+
+	if [[ $(tc-getFC) == *-*-*-*-gfortran ]]; then
+		sed \
+			-e "s:ifneq (\$(FC),gfortran):ifneq (\$(FC),$(tc-getFC)):g" \
+			-e "s:ifeq (\$(FC),gfortran):ifeq (\$(FC),$(tc-getFC)):g" \
+			-i src/config/makefile.h || die
+	fi
+}
+
+src_compile() {
+	export USE_SUBGROUPS=yes
+	if use mpi ; then
+		export MSG_COMMS=MPI
+		export USE_MPI=yes
+		export MPI_LOC=/usr
+		export MPI_INCLUDE=$MPI_LOC/include
+		export MPI_LIB=$MPI_LOC/$(get_libdir)
+		export LIBMPI="$(mpif90 -showme:link)"
+	fi
+	if [ "$ARCH" = "amd64" ]; then
+		export NWCHEM_TARGET=LINUX64
+	elif [ "$ARCH" = "ia64" ]; then
+		export NWCHEM_TARGET=LINUX64
+	elif [ "$ARCH" = "x86" ]; then
+		export NWCHEM_TARGET=LINUX
+	elif [ "$ARCH" = "ppc" ]; then
+		export NWCHEM_TARGET=LINUX
+	else
+		die "Unknown architecture"
+	fi
+	if use python ; then
+		if [ "$ARCH" = "amd64" ] || [ "$ARCH" = "ia64" ]; then
+			export USE_PYTHON64=yes
+		fi
+		export PYTHONHOME=/usr
+		export PYTHONVERSION=$(eselect python show --python2 |awk -Fpython '{ print $2 }')
+		export PYTHONPATH="./:${S}/contrib/python/"
+		export NWCHEM_MODULES="all python"
+	else
+		export NWCHEM_MODULES="all"
+	fi
+
+	cd src
+	emake \
+		DIAG=PAR \
+		FC=$(tc-getFC) \
+		CC=$(tc-getCC) \
+		CXX=$(tc-getCXX) \
+		NWCHEM_TOP="${S}" \
+		NWCHEM_EXECUTABLE="${S}/bin/${NWCHEM_TARGET}/nwchem"
+
+	if use doc; then
+		cd "${S}"/doc
+		VARTEXFONTS="${T}/fonts"
+		emake \
+			DIAG=PAR \
+			NWCHEM_TOP="${S}" \
+			pdf html
+	fi
+}
+
+src_install() {
+	dobin bin/${NWCHEM_TARGET}/nwchem
+
+	insinto /usr/share/NWChem/basis/
+	doins -r src/basis/libraries src/data
+	insinto /usr/share/NWChem/nwpw
+	doins -r src/nwpw/libraryps
+
+	insinto /etc
+	doins nwchemrc
+
+	use examples && \
+		insinto /usr/share/NWChem/ && \
+		doins -r examples
+
+	use nwchem-tests && \
+		insinto /usr/share/NWChem && \
+		doins -r QA/tests
+
+	use doc && \
+		insinto /usr/share/doc/"${P}" && \
+		doins -r doc/nwahtml && \
+		doins -r web
+
+}
+
+pkg_postinst() {
+	echo
+	elog "The user will need to link \$HOME/.nwchemrc to /etc/nwchemrc"
+	elog "or copy it in order to tell NWChem the right position of the"
+	elog "basis library and other necessary data."
+	echo
+}