From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 231051381F3 for ; Sat, 28 Sep 2013 10:57:04 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id B6741E0BDF; Sat, 28 Sep 2013 10:57:03 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 5286DE0BDF for ; Sat, 28 Sep 2013 10:57:03 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 6E61533DA49 for ; Sat, 28 Sep 2013 10:57:02 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id 1D6AAE5309 for ; Sat, 28 Sep 2013 10:57:00 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: <1380365807.4603ef2b8bf5e03c44f59aaf2ed43ab046d6ca8f.jlec@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/bowtie/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/bowtie/ChangeLog sci-biology/bowtie/bowtie-2.1.0.ebuild X-VCS-Directories: sci-biology/bowtie/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: 4603ef2b8bf5e03c44f59aaf2ed43ab046d6ca8f X-VCS-Branch: master Date: Sat, 28 Sep 2013 10:57:00 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: f3fa477d-70ac-49f8-a132-2a53e7fdd7d7 X-Archives-Hash: 1577b014a953a20eacd0508a224810f3 commit: 4603ef2b8bf5e03c44f59aaf2ed43ab046d6ca8f Author: Justin Lecher gentoo org> AuthorDate: Sat Sep 28 10:56:47 2013 +0000 Commit: Justin Lecher gentoo org> CommitDate: Sat Sep 28 10:56:47 2013 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4603ef2b sci-biology/bowtie: Exchange common variables, fix SRC_URI Package-Manager: portage-2.2.7 --- sci-biology/bowtie/ChangeLog | 7 +++++++ sci-biology/bowtie/bowtie-2.1.0.ebuild | 6 +++--- 2 files changed, 10 insertions(+), 3 deletions(-) diff --git a/sci-biology/bowtie/ChangeLog b/sci-biology/bowtie/ChangeLog new file mode 100644 index 0000000..1a636c5 --- /dev/null +++ b/sci-biology/bowtie/ChangeLog @@ -0,0 +1,7 @@ +# ChangeLog for sci-biology/bowtie +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + + 28 Sep 2013; Justin Lecher bowtie-2.1.0.ebuild: + Exchange common variables, fix SRC_URI + diff --git a/sci-biology/bowtie/bowtie-2.1.0.ebuild b/sci-biology/bowtie/bowtie-2.1.0.ebuild index 26bf770..a12279a 100644 --- a/sci-biology/bowtie/bowtie-2.1.0.ebuild +++ b/sci-biology/bowtie/bowtie-2.1.0.ebuild @@ -8,7 +8,7 @@ inherit eutils toolchain-funcs DESCRIPTION="An ultrafast memory-efficient short read aligner" HOMEPAGE="http://bowtie-bio.sourceforge.net/" -SRC_URI="mirror://sourceforge/bowtie-bio/${P}-source.zip" +SRC_URI="mirror://sourceforge/project/${PN}-bio/${PN}2/${PV}/${PN}2-${PV}-source.zip" LICENSE="GPL-3" SLOT="2" @@ -41,11 +41,11 @@ src_compile() { } src_install() { - dobin bowtie2 bowtie2-* + dobin ${PN}2 ${PN}2-* exeinto /usr/share/${PN}2/scripts doexe scripts/* - newman MANUAL bowtie2.1 + newman MANUAL ${PN}2.1 dodoc AUTHORS NEWS TUTORIAL dohtml doc/manual.html doc/style.css