* [gentoo-commits] proj/sci:master commit in: sci-chemistry/openbabel/
@ 2011-03-07 12:01 Justin Lecher
0 siblings, 0 replies; 12+ messages in thread
From: Justin Lecher @ 2011-03-07 12:01 UTC (permalink / raw
To: gentoo-commits
commit: 624ce4d1e91029cab1ccfb9156bc6401caf452df
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Mar 7 11:13:58 2011 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Mar 7 11:13:58 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=624ce4d1
Correct Slots for gtk 3 introduction to tree
(Portage version: 2.2.0_alpha26/git/Linux x86_64, signed Manifest commit with key 70EB7916)
---
sci-chemistry/openbabel/ChangeLog | 5 ++++-
sci-chemistry/openbabel/openbabel-2.3.0.ebuild | 9 ++++-----
2 files changed, 8 insertions(+), 6 deletions(-)
diff --git a/sci-chemistry/openbabel/ChangeLog b/sci-chemistry/openbabel/ChangeLog
index 827386e..84f52f9 100644
--- a/sci-chemistry/openbabel/ChangeLog
+++ b/sci-chemistry/openbabel/ChangeLog
@@ -1,7 +1,10 @@
# ChangeLog for sci-chemistry/openbabel
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 07 Mar 2011; Justin Lecher <jlec@gentoo.org> openbabel-2.3.0.ebuild:
+ Correct Slots for gtk 3 introduction to tree
+
14 Nov 2010; Reinis Danne <rei4dan@gmail.com> openbabel-2.3.0.ebuild,
+files/openbabel-2.3.0-test_lib_path.patch:
Fix library path for tests.
diff --git a/sci-chemistry/openbabel/openbabel-2.3.0.ebuild b/sci-chemistry/openbabel/openbabel-2.3.0.ebuild
index 26ecada..50c9afa 100644
--- a/sci-chemistry/openbabel/openbabel-2.3.0.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.3.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/openbabel/openbabel-2.2.3.ebuild,v 1.11 2010/07/18 14:53:22 armin76 Exp $
@@ -16,13 +16,12 @@ LICENSE="GPL-2"
IUSE="doc gui"
RDEPEND="
- >=dev-libs/libxml2-2.6.5
+ dev-libs/libxml2:2
>=sci-chemistry/inchi-1.03
- gui? ( x11-libs/wxGTK )
!sci-chemistry/babel
dev-cpp/eigen:2
- sys-libs/zlib"
-
+ sys-libs/zlib
+ gui? ( x11-libs/wxGTK )"
DEPEND="${RDEPEND}
>=dev-util/cmake-2.4.8"
^ permalink raw reply related [flat|nested] 12+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/openbabel/
@ 2011-03-25 16:38 Justin Lecher
0 siblings, 0 replies; 12+ messages in thread
From: Justin Lecher @ 2011-03-25 16:38 UTC (permalink / raw
To: gentoo-commits
commit: b42161658cfe02fb43865103a0659b2e350412b9
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Mar 25 16:26:42 2011 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Mar 25 16:26:42 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b4216165
Cleaned ebuild
(Portage version: 2.2.0_alpha28/git/Linux x86_64, signed Manifest commit with key 70EB7916)
---
sci-chemistry/openbabel/ChangeLog | 4 ++
sci-chemistry/openbabel/metadata.xml | 3 --
sci-chemistry/openbabel/openbabel-2.3.0.ebuild | 42 ++++++++++++++++-------
3 files changed, 33 insertions(+), 16 deletions(-)
diff --git a/sci-chemistry/openbabel/ChangeLog b/sci-chemistry/openbabel/ChangeLog
index 84f52f9..603f9c1 100644
--- a/sci-chemistry/openbabel/ChangeLog
+++ b/sci-chemistry/openbabel/ChangeLog
@@ -2,6 +2,10 @@
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 25 Mar 2011; Justin Lecher <jlec@gentoo.org> openbabel-2.3.0.ebuild,
+ metadata.xml:
+ Cleaned ebuild
+
07 Mar 2011; Justin Lecher <jlec@gentoo.org> openbabel-2.3.0.ebuild:
Correct Slots for gtk 3 introduction to tree
diff --git a/sci-chemistry/openbabel/metadata.xml b/sci-chemistry/openbabel/metadata.xml
index 9216990..d0238dd 100644
--- a/sci-chemistry/openbabel/metadata.xml
+++ b/sci-chemistry/openbabel/metadata.xml
@@ -8,7 +8,4 @@
search, convert, analyze, or store data from molecular modeling, chemistry,
solid-state materials, biochemistry, or related areas.
</longdescription>
- <use>
- <flag name="gui">Build wxWidgets GUI.</flag>
- </use>
</pkgmetadata>
diff --git a/sci-chemistry/openbabel/openbabel-2.3.0.ebuild b/sci-chemistry/openbabel/openbabel-2.3.0.ebuild
index 50c9afa..1229d6f 100644
--- a/sci-chemistry/openbabel/openbabel-2.3.0.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.3.0.ebuild
@@ -4,7 +4,10 @@
EAPI="3"
-inherit cmake-utils eutils
+WX_GTK_VER="2.8"
+PYTHON_DEPEND="python? 2"
+
+inherit cmake-utils eutils python wxwidgets
DESCRIPTION="Interconverts file formats used in molecular modeling"
HOMEPAGE="http://openbabel.sourceforge.net/"
@@ -13,38 +16,51 @@ SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
KEYWORDS="~amd64"
SLOT="0"
LICENSE="GPL-2"
-IUSE="doc gui"
+IUSE="doc python wxwidgets"
RDEPEND="
+ dev-cpp/eigen:2
dev-libs/libxml2:2
- >=sci-chemistry/inchi-1.03
!sci-chemistry/babel
- dev-cpp/eigen:2
+ sci-libs/inchi
sys-libs/zlib
- gui? ( x11-libs/wxGTK )"
+ wxwidgets? ( x11-libs/wxGTK:2.8[X] )"
DEPEND="${RDEPEND}
>=dev-util/cmake-2.4.8"
+DOCS="AUTHORS ChangeLog NEWS README THANKS doc/*.inc doc/README* doc/*.mol2"
+
+src_prepare() {
+ epatch "${FILESDIR}"/${P}-test_lib_path.patch
+}
+
src_configure() {
- epatch "${FILESDIR}/${P}-test_lib_path.patch" \
- || die "Failed to apply ${P}-test_lib_path.patch"
local mycmakeargs=""
- mycmakeargs="${mycmakearg}
+ mycmakeargs="${mycmakeargs}
-DOPENBABEL_USE_SYSTEM_INCHI=ON
- $(cmake-utils_use gui BUILD_GUI)
- $(cmake-utils_use_enable test TESTS)"
+ $(cmake-utils_use python PYTHON_BINDINGS)
+ $(cmake-utils_use wxwidgets BUILD_GUI)"
cmake-utils_src_configure
}
src_install() {
- dodoc AUTHORS ChangeLog NEWS README THANKS || die
- dodoc doc/{*.inc,README*,*.inc,*.mol2} || die
dohtml doc/{*.html,*.png} || die
if use doc ; then
insinto /usr/share/doc/${PF}/API/html
doins doc/API/html/* || die
fi
-
cmake-utils_src_install
}
+
+src_test() {
+ local mycmakeargs=""
+ mycmakeargs="${mycmakeargs}
+ -DOPENBABEL_USE_SYSTEM_INCHI=ON
+ $(cmake-utils_use wxwidgets BUILD_GUI)
+ $(cmake-utils_use_enable test TESTS)"
+
+ cmake-utils_src_configure
+ cmake-utils_src_compile
+ cmake-utils_src_test
+}
^ permalink raw reply related [flat|nested] 12+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/openbabel/
@ 2011-03-25 16:38 Justin Lecher
0 siblings, 0 replies; 12+ messages in thread
From: Justin Lecher @ 2011-03-25 16:38 UTC (permalink / raw
To: gentoo-commits
commit: dfa0844f26efc5b3b66308fbd4ca4b6e9591eee2
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Mar 25 16:33:03 2011 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Mar 25 16:33:03 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=dfa0844f
Removed python again
(Portage version: 2.2.0_alpha28/git/Linux x86_64, signed Manifest commit with key 70EB7916)
---
sci-chemistry/openbabel/ChangeLog | 9 +++++++++
sci-chemistry/openbabel/openbabel-2.3.0.ebuild | 6 ++----
2 files changed, 11 insertions(+), 4 deletions(-)
diff --git a/sci-chemistry/openbabel/ChangeLog b/sci-chemistry/openbabel/ChangeLog
index 603f9c1..5ef70e9 100644
--- a/sci-chemistry/openbabel/ChangeLog
+++ b/sci-chemistry/openbabel/ChangeLog
@@ -2,6 +2,15 @@
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 25 Mar 2011; Justin Lecher <jlec@gentoo.org> openbabel-2.3.0.ebuild:
+ Removed python again
+
+ 25 Mar 2011; Justin Lecher <jlec@gentoo.org> openbabel-2.3.0.ebuild:
+ Removed python again
+
+ 25 Mar 2011; Justin Lecher <jlec@gentoo.org> openbabel-2.3.0.ebuild:
+ Removed python again
+
25 Mar 2011; Justin Lecher <jlec@gentoo.org> openbabel-2.3.0.ebuild,
metadata.xml:
Cleaned ebuild
diff --git a/sci-chemistry/openbabel/openbabel-2.3.0.ebuild b/sci-chemistry/openbabel/openbabel-2.3.0.ebuild
index 1229d6f..aed0858 100644
--- a/sci-chemistry/openbabel/openbabel-2.3.0.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.3.0.ebuild
@@ -5,9 +5,8 @@
EAPI="3"
WX_GTK_VER="2.8"
-PYTHON_DEPEND="python? 2"
-inherit cmake-utils eutils python wxwidgets
+inherit cmake-utils eutils wxwidgets
DESCRIPTION="Interconverts file formats used in molecular modeling"
HOMEPAGE="http://openbabel.sourceforge.net/"
@@ -16,7 +15,7 @@ SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
KEYWORDS="~amd64"
SLOT="0"
LICENSE="GPL-2"
-IUSE="doc python wxwidgets"
+IUSE="doc wxwidgets"
RDEPEND="
dev-cpp/eigen:2
@@ -38,7 +37,6 @@ src_configure() {
local mycmakeargs=""
mycmakeargs="${mycmakeargs}
-DOPENBABEL_USE_SYSTEM_INCHI=ON
- $(cmake-utils_use python PYTHON_BINDINGS)
$(cmake-utils_use wxwidgets BUILD_GUI)"
cmake-utils_src_configure
^ permalink raw reply related [flat|nested] 12+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/openbabel/
@ 2011-03-25 17:25 Justin Lecher
0 siblings, 0 replies; 12+ messages in thread
From: Justin Lecher @ 2011-03-25 17:25 UTC (permalink / raw
To: gentoo-commits
commit: c6f72ef083e09d88babbe466d6c59e31e6952e21
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Mar 25 16:49:54 2011 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Mar 25 16:49:54 2011 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=c6f72ef0
keyworded for ~x86
(Portage version: 2.2.0_alpha28/git/Linux x86_64, signed Manifest commit with key 70EB7916)
---
sci-chemistry/openbabel/ChangeLog | 3 +++
sci-chemistry/openbabel/openbabel-2.3.0.ebuild | 2 +-
2 files changed, 4 insertions(+), 1 deletions(-)
diff --git a/sci-chemistry/openbabel/ChangeLog b/sci-chemistry/openbabel/ChangeLog
index 5ef70e9..832ee7b 100644
--- a/sci-chemistry/openbabel/ChangeLog
+++ b/sci-chemistry/openbabel/ChangeLog
@@ -3,6 +3,9 @@
# $Header: $
25 Mar 2011; Justin Lecher <jlec@gentoo.org> openbabel-2.3.0.ebuild:
+ keyworded for ~x86
+
+ 25 Mar 2011; Justin Lecher <jlec@gentoo.org> openbabel-2.3.0.ebuild:
Removed python again
25 Mar 2011; Justin Lecher <jlec@gentoo.org> openbabel-2.3.0.ebuild:
diff --git a/sci-chemistry/openbabel/openbabel-2.3.0.ebuild b/sci-chemistry/openbabel/openbabel-2.3.0.ebuild
index aed0858..242e58a 100644
--- a/sci-chemistry/openbabel/openbabel-2.3.0.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.3.0.ebuild
@@ -12,7 +12,7 @@ DESCRIPTION="Interconverts file formats used in molecular modeling"
HOMEPAGE="http://openbabel.sourceforge.net/"
SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
-KEYWORDS="~amd64"
+KEYWORDS="~amd64 ~x86"
SLOT="0"
LICENSE="GPL-2"
IUSE="doc wxwidgets"
^ permalink raw reply related [flat|nested] 12+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/openbabel/
@ 2012-12-06 17:20 Justin Lecher
0 siblings, 0 replies; 12+ messages in thread
From: Justin Lecher @ 2012-12-06 17:20 UTC (permalink / raw
To: gentoo-commits
commit: d6dbcfe8b790137a10b8c819fb3a840369ed4994
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Thu Dec 6 16:10:47 2012 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Thu Dec 6 16:10:47 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=d6dbcfe8
sci-chemistry/openbabel: Add missing dep for USE=doc
Package-Manager: portage-2.2.0_alpha144
---
sci-chemistry/openbabel/ChangeLog | 3 +++
sci-chemistry/openbabel/openbabel-2.3.2.ebuild | 3 ++-
2 files changed, 5 insertions(+), 1 deletions(-)
diff --git a/sci-chemistry/openbabel/ChangeLog b/sci-chemistry/openbabel/ChangeLog
index fdd934a..9cddae1 100644
--- a/sci-chemistry/openbabel/ChangeLog
+++ b/sci-chemistry/openbabel/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 06 Dec 2012; Justin Lecher <jlec@gentoo.org> openbabel-2.3.2.ebuild:
+ Add missing dep for USE=doc
+
26 Nov 2012; Justin Lecher <jlec@gentoo.org> openbabel-2.3.2.ebuild:
Add test phase, check openmp correctly
diff --git a/sci-chemistry/openbabel/openbabel-2.3.2.ebuild b/sci-chemistry/openbabel/openbabel-2.3.2.ebuild
index 4be6337..6935e6e 100644
--- a/sci-chemistry/openbabel/openbabel-2.3.2.ebuild
+++ b/sci-chemistry/openbabel/openbabel-2.3.2.ebuild
@@ -25,7 +25,8 @@ RDEPEND="
sys-libs/zlib
wxwidgets? ( x11-libs/wxGTK:2.8[X] )"
DEPEND="${RDEPEND}
- >=dev-util/cmake-2.4.8"
+ >=dev-util/cmake-2.4.8
+ doc? ( app-doc/doxygen )"
PDEPEND="
perl? ( sci-chemistry/openbabel-perl )
python? ( sci-chemistry/openbabel-python )"
^ permalink raw reply related [flat|nested] 12+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/openbabel/
@ 2013-09-26 20:27 Reinis Danne
0 siblings, 0 replies; 12+ messages in thread
From: Reinis Danne @ 2013-09-26 20:27 UTC (permalink / raw
To: gentoo-commits
commit: 2f0f40fce0d6086339373a4a78cce3615904f619
Author: Reinis Danne <rei4dan <AT> gmail <DOT> com>
AuthorDate: Tue Sep 24 18:41:59 2013 +0000
Commit: Reinis Danne <rei4dan <AT> gmail <DOT> com>
CommitDate: Thu Sep 26 20:25:20 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2f0f40fc
sci-chemistry/openbabel: Add live ebuild
---
sci-chemistry/openbabel/ChangeLog | 10 +++
sci-chemistry/openbabel/metadata.xml | 20 ++++++
sci-chemistry/openbabel/openbabel-9999.ebuild | 87 +++++++++++++++++++++++++++
3 files changed, 117 insertions(+)
diff --git a/sci-chemistry/openbabel/ChangeLog b/sci-chemistry/openbabel/ChangeLog
new file mode 100644
index 0000000..be72d72
--- /dev/null
+++ b/sci-chemistry/openbabel/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-chemistry/openbabel
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*openbabel-9999 (24 Sep 2013)
+
+ 24 Sep 2013; Reinis Danne <rei4dan@gmail.com> +openbabel-9999.ebuild,
+ +metadata.xml:
+ Add live ebuild with Java, Perl, Python and Ruby bindings.
+
diff --git a/sci-chemistry/openbabel/metadata.xml b/sci-chemistry/openbabel/metadata.xml
new file mode 100644
index 0000000..f0fb5ee
--- /dev/null
+++ b/sci-chemistry/openbabel/metadata.xml
@@ -0,0 +1,20 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-chemistry</herd>
+ <longdescription>
+ Open Babel is a chemical toolbox designed to speak the many languages of
+ chemical data. It's an open, collaborative project allowing anyone to
+ search, convert, analyze, or store data from molecular modeling, chemistry,
+ solid-state materials, biochemistry, or related areas.
+ </longdescription>
+ <use>
+ <flag name="doc">Install API dicumentation.</flag>
+ <flag name="openmp">Enable parallelization using OpenMP.</flag>
+ <flag name="java">Install Java bindings.</flag>
+ <flag name="perl">Install Perl bindings.</flag>
+ <flag name="python">Install Python bindings and PyBel.</flag>
+ <flag name="ruby">Install Ruby bindings.</flag>
+ <flag name="wxwidgets">Build Open Babel GUI.</flag>
+ </use>
+</pkgmetadata>
diff --git a/sci-chemistry/openbabel/openbabel-9999.ebuild b/sci-chemistry/openbabel/openbabel-9999.ebuild
new file mode 100644
index 0000000..d57d78d
--- /dev/null
+++ b/sci-chemistry/openbabel/openbabel-9999.ebuild
@@ -0,0 +1,87 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+WX_GTK_VER="2.8"
+
+inherit cmake-utils eutils git-2 wxwidgets
+
+DESCRIPTION="Interconverts file formats used in molecular modeling"
+HOMEPAGE="http://openbabel.sourceforge.net/"
+EGIT_REPO_URI="https://github.com/openbabel/openbabel.git"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS=""
+IUSE="doc java openmp perl python ruby test wxwidgets"
+
+RDEPEND="
+ dev-cpp/eigen
+ dev-libs/libxml2:2
+ !sci-chemistry/babel
+ sci-libs/inchi
+ sys-libs/zlib
+ wxwidgets? ( x11-libs/wxGTK:2.8[X] )"
+DEPEND="${RDEPEND}
+ >=dev-util/cmake-2.4.8
+ doc? ( app-doc/doxygen )"
+PDEPEND="
+ java? ( sci-chemistry/openbabel-java )
+ perl? ( sci-chemistry/openbabel-perl )
+ python? ( sci-chemistry/openbabel-python )
+ ruby? ( sci-chemistry/openbabel-ruby )"
+
+DOCS="AUTHORS ChangeLog NEWS README THANKS doc/*.inc doc/README* doc/*.mol2"
+
+pkg_setup() {
+ if use openmp; then
+ if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
+ ewarn "OpenMP is not available in your current selected gcc"
+ die "need openmp capable gcc"
+ fi
+ FORTRAN_NEED_OPENMP=1
+ fi
+}
+
+src_configure() {
+ local mycmakeargs=""
+ mycmakeargs="${mycmakeargs}
+ -DOPENBABEL_USE_SYSTEM_INCHI=ON
+ $(cmake-utils_use_enable openmp OPENMP)
+ $(cmake-utils_use wxwidgets BUILD_GUI)"
+
+ cmake-utils_src_configure
+}
+
+src_test() {
+ local mycmakeargs=""
+ mycmakeargs="${mycmakeargs}
+ -DOPENBABEL_USE_SYSTEM_INCHI=ON
+ -DPYTHON_EXECUTABLE=false
+ $(cmake-utils_use wxwidgets BUILD_GUI)
+ $(cmake-utils_use_enable openmp OPENMP)
+ $(cmake-utils_use_enable test TESTS)"
+
+ cmake-utils_src_configure
+ cmake-utils_src_compile
+ cmake-utils_src_test -E py
+}
+
+src_install() {
+ dohtml doc/{*.html,*.png}
+ if use doc ; then
+ insinto /usr/share/doc/${PF}/API/html
+ doins doc/API/html/*
+ fi
+ cmake-utils_src_install
+
+ # Ensure that modules are allways in openbabel/${PV}
+ pushd "${ED}/usr/$(get_libdir)/openbabel"
+ ver=$(ls -d * | grep -E '([0-9]+[.]){2}[0-9]+')
+ if [ "${ver}" != "${PV}" ] ; then
+ ln -s ${ver} ${PV}
+ fi
+ popd
+}
^ permalink raw reply related [flat|nested] 12+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/openbabel/
@ 2013-11-14 17:15 Reinis Danne
0 siblings, 0 replies; 12+ messages in thread
From: Reinis Danne @ 2013-11-14 17:15 UTC (permalink / raw
To: gentoo-commits
commit: 625715bc81f35443eafa6600a34cb2296a703123
Author: Reinis Danne <rei4dan <AT> gmail <DOT> com>
AuthorDate: Thu Nov 14 17:01:27 2013 +0000
Commit: Reinis Danne <rei4dan <AT> gmail <DOT> com>
CommitDate: Thu Nov 14 17:14:59 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=625715bc
sci-chemistry/openbabel: Adjust for README -> README.md rename
---
sci-chemistry/openbabel/ChangeLog | 3 +++
sci-chemistry/openbabel/openbabel-9999.ebuild | 2 +-
2 files changed, 4 insertions(+), 1 deletion(-)
diff --git a/sci-chemistry/openbabel/ChangeLog b/sci-chemistry/openbabel/ChangeLog
index be72d72..e8bb223 100644
--- a/sci-chemistry/openbabel/ChangeLog
+++ b/sci-chemistry/openbabel/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 14 Nov 2013; Reinis Danne <rei4dan@gmail.com> openbabel-9999.ebuild:
+ Adjust for README -> README.md rename.
+
*openbabel-9999 (24 Sep 2013)
24 Sep 2013; Reinis Danne <rei4dan@gmail.com> +openbabel-9999.ebuild,
diff --git a/sci-chemistry/openbabel/openbabel-9999.ebuild b/sci-chemistry/openbabel/openbabel-9999.ebuild
index d57d78d..b653f24 100644
--- a/sci-chemistry/openbabel/openbabel-9999.ebuild
+++ b/sci-chemistry/openbabel/openbabel-9999.ebuild
@@ -33,7 +33,7 @@ PDEPEND="
python? ( sci-chemistry/openbabel-python )
ruby? ( sci-chemistry/openbabel-ruby )"
-DOCS="AUTHORS ChangeLog NEWS README THANKS doc/*.inc doc/README* doc/*.mol2"
+DOCS="AUTHORS ChangeLog NEWS README.md THANKS doc/*.inc doc/README* doc/*.mol2"
pkg_setup() {
if use openmp; then
^ permalink raw reply related [flat|nested] 12+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/openbabel/
@ 2014-01-06 18:33 Justin Lecher
0 siblings, 0 replies; 12+ messages in thread
From: Justin Lecher @ 2014-01-06 18:33 UTC (permalink / raw
To: gentoo-commits
commit: 4723b0b61978b071d10ed3eae3d98c9c3f5d0e32
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jan 6 18:33:04 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jan 6 18:33:04 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4723b0b6
sci-chemistry/openbabel: Switch from git-2 to git-r3
Package-Manager: portage-2.2.8
---
sci-chemistry/openbabel/ChangeLog | 6 +++++-
sci-chemistry/openbabel/metadata.xml | 18 +++++++++---------
sci-chemistry/openbabel/openbabel-9999.ebuild | 9 +++++----
3 files changed, 19 insertions(+), 14 deletions(-)
diff --git a/sci-chemistry/openbabel/ChangeLog b/sci-chemistry/openbabel/ChangeLog
index e8bb223..08338ff 100644
--- a/sci-chemistry/openbabel/ChangeLog
+++ b/sci-chemistry/openbabel/ChangeLog
@@ -1,7 +1,11 @@
# ChangeLog for sci-chemistry/openbabel
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 06 Jan 2014; Justin Lecher <jlec@gentoo.org> openbabel-9999.ebuild,
+ metadata.xml:
+ Switch from git-2 to git-r3
+
14 Nov 2013; Reinis Danne <rei4dan@gmail.com> openbabel-9999.ebuild:
Adjust for README -> README.md rename.
diff --git a/sci-chemistry/openbabel/metadata.xml b/sci-chemistry/openbabel/metadata.xml
index f0fb5ee..e366d5f 100644
--- a/sci-chemistry/openbabel/metadata.xml
+++ b/sci-chemistry/openbabel/metadata.xml
@@ -8,13 +8,13 @@
search, convert, analyze, or store data from molecular modeling, chemistry,
solid-state materials, biochemistry, or related areas.
</longdescription>
- <use>
- <flag name="doc">Install API dicumentation.</flag>
- <flag name="openmp">Enable parallelization using OpenMP.</flag>
- <flag name="java">Install Java bindings.</flag>
- <flag name="perl">Install Perl bindings.</flag>
- <flag name="python">Install Python bindings and PyBel.</flag>
- <flag name="ruby">Install Ruby bindings.</flag>
- <flag name="wxwidgets">Build Open Babel GUI.</flag>
- </use>
+ <use>
+ <flag name="doc">Install API dicumentation.</flag>
+ <flag name="openmp">Enable parallelization using OpenMP.</flag>
+ <flag name="java">Install Java bindings.</flag>
+ <flag name="perl">Install Perl bindings.</flag>
+ <flag name="python">Install Python bindings and PyBel.</flag>
+ <flag name="ruby">Install Ruby bindings.</flag>
+ <flag name="wxwidgets">Build Open Babel GUI.</flag>
+ </use>
</pkgmetadata>
diff --git a/sci-chemistry/openbabel/openbabel-9999.ebuild b/sci-chemistry/openbabel/openbabel-9999.ebuild
index b653f24..21eb571 100644
--- a/sci-chemistry/openbabel/openbabel-9999.ebuild
+++ b/sci-chemistry/openbabel/openbabel-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2013 Gentoo Foundation
+# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
@@ -6,10 +6,11 @@ EAPI=5
WX_GTK_VER="2.8"
-inherit cmake-utils eutils git-2 wxwidgets
+inherit cmake-utils eutils git-r3 wxwidgets
DESCRIPTION="Interconverts file formats used in molecular modeling"
HOMEPAGE="http://openbabel.sourceforge.net/"
+SRC_URI=""
EGIT_REPO_URI="https://github.com/openbabel/openbabel.git"
LICENSE="GPL-2"
@@ -23,7 +24,7 @@ RDEPEND="
!sci-chemistry/babel
sci-libs/inchi
sys-libs/zlib
- wxwidgets? ( x11-libs/wxGTK:2.8[X] )"
+ wxwidgets? ( x11-libs/wxGTK:${WX_GTK_VER}[X] )"
DEPEND="${RDEPEND}
>=dev-util/cmake-2.4.8
doc? ( app-doc/doxygen )"
@@ -33,7 +34,7 @@ PDEPEND="
python? ( sci-chemistry/openbabel-python )
ruby? ( sci-chemistry/openbabel-ruby )"
-DOCS="AUTHORS ChangeLog NEWS README.md THANKS doc/*.inc doc/README* doc/*.mol2"
+DOCS=( AUTHORS ChangeLog NEWS README.md THANKS doc/*.inc doc/README* doc/*.mol2 )
pkg_setup() {
if use openmp; then
^ permalink raw reply related [flat|nested] 12+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/openbabel/
@ 2014-02-14 18:19 Reinis Danne
0 siblings, 0 replies; 12+ messages in thread
From: Reinis Danne @ 2014-02-14 18:19 UTC (permalink / raw
To: gentoo-commits
commit: d74ba8ff231506fbc2b037c8dbbe1e24b1c80778
Author: Reinis Danne <rei4dan <AT> gmail <DOT> com>
AuthorDate: Fri Feb 14 18:03:38 2014 +0000
Commit: Reinis Danne <rei4dan <AT> gmail <DOT> com>
CommitDate: Fri Feb 14 18:03:38 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=d74ba8ff
sci-chemistry/openbabel: Fix DOCS
---
sci-chemistry/openbabel/ChangeLog | 3 +++
sci-chemistry/openbabel/openbabel-9999.ebuild | 2 +-
2 files changed, 4 insertions(+), 1 deletion(-)
diff --git a/sci-chemistry/openbabel/ChangeLog b/sci-chemistry/openbabel/ChangeLog
index 08338ff..1d2437c 100644
--- a/sci-chemistry/openbabel/ChangeLog
+++ b/sci-chemistry/openbabel/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 14 Feb 2014; Reinis Danne <rei4dan@gmail.com> openbabel-9999.ebuild:
+ DOCS has to be string for globs to work. Remove ChangeLog from DOCS.
+
06 Jan 2014; Justin Lecher <jlec@gentoo.org> openbabel-9999.ebuild,
metadata.xml:
Switch from git-2 to git-r3
diff --git a/sci-chemistry/openbabel/openbabel-9999.ebuild b/sci-chemistry/openbabel/openbabel-9999.ebuild
index 21eb571..e4077c4 100644
--- a/sci-chemistry/openbabel/openbabel-9999.ebuild
+++ b/sci-chemistry/openbabel/openbabel-9999.ebuild
@@ -34,7 +34,7 @@ PDEPEND="
python? ( sci-chemistry/openbabel-python )
ruby? ( sci-chemistry/openbabel-ruby )"
-DOCS=( AUTHORS ChangeLog NEWS README.md THANKS doc/*.inc doc/README* doc/*.mol2 )
+DOCS="AUTHORS NEWS README.md THANKS doc/*.inc doc/README* doc/*.mol2"
pkg_setup() {
if use openmp; then
^ permalink raw reply related [flat|nested] 12+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/openbabel/
@ 2015-09-21 17:44 Justin Lecher
0 siblings, 0 replies; 12+ messages in thread
From: Justin Lecher @ 2015-09-21 17:44 UTC (permalink / raw
To: gentoo-commits
commit: 7b0efa5d7a93f0d3430137f787c05600c87d2737
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 21 17:26:41 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Sep 21 17:26:41 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7b0efa5d
sci-chemistry/openbabel: Add subslot operators
Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-chemistry/openbabel/openbabel-9999.ebuild | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/sci-chemistry/openbabel/openbabel-9999.ebuild b/sci-chemistry/openbabel/openbabel-9999.ebuild
index eb9a387..c871b14 100644
--- a/sci-chemistry/openbabel/openbabel-9999.ebuild
+++ b/sci-chemistry/openbabel/openbabel-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -19,7 +19,7 @@ KEYWORDS=""
IUSE="doc java openmp perl python ruby test wxwidgets"
RDEPEND="
- dev-cpp/eigen
+ dev-cpp/eigen:3
dev-libs/libxml2:2
!sci-chemistry/babel
sci-libs/inchi
^ permalink raw reply related [flat|nested] 12+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/openbabel/
@ 2016-01-06 7:53 Justin Lecher
0 siblings, 0 replies; 12+ messages in thread
From: Justin Lecher @ 2016-01-06 7:53 UTC (permalink / raw
To: gentoo-commits
commit: e8ae9452197df889ba3309fb72d90cc5a5bd10d5
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Jan 6 07:23:42 2016 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Jan 6 07:23:42 2016 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e8ae9452
sci-chemistry/openbabel: Respect CXXFLAGS
drop usage of dohtml
Package-Manager: portage-2.2.26
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
sci-chemistry/openbabel/metadata.xml | 2 +-
sci-chemistry/openbabel/openbabel-9999.ebuild | 20 ++++++++++++--------
2 files changed, 13 insertions(+), 9 deletions(-)
diff --git a/sci-chemistry/openbabel/metadata.xml b/sci-chemistry/openbabel/metadata.xml
index 0e989df..9712658 100644
--- a/sci-chemistry/openbabel/metadata.xml
+++ b/sci-chemistry/openbabel/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version='1.0' encoding='UTF-8'?>
+<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci-chemistry</herd>
diff --git a/sci-chemistry/openbabel/openbabel-9999.ebuild b/sci-chemistry/openbabel/openbabel-9999.ebuild
index c871b14..660e3a7 100644
--- a/sci-chemistry/openbabel/openbabel-9999.ebuild
+++ b/sci-chemistry/openbabel/openbabel-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
@@ -50,6 +50,7 @@ src_configure() {
local mycmakeargs=""
mycmakeargs="${mycmakeargs}
-DOPENBABEL_USE_SYSTEM_INCHI=ON
+ -DOPTIMIZE_NATIVE=OFF
$(cmake-utils_use_enable openmp OPENMP)
$(cmake-utils_use wxwidgets BUILD_GUI)"
@@ -60,6 +61,7 @@ src_test() {
local mycmakeargs=""
mycmakeargs="${mycmakeargs}
-DOPENBABEL_USE_SYSTEM_INCHI=ON
+ -DOPTIMIZE_NATIVE=OFF
-DPYTHON_EXECUTABLE=false
$(cmake-utils_use wxwidgets BUILD_GUI)
$(cmake-utils_use_enable openmp OPENMP)
@@ -71,18 +73,20 @@ src_test() {
}
src_install() {
- dohtml doc/{*.html,*.png}
- if use doc ; then
- insinto /usr/share/doc/${PF}/API/html
- doins doc/API/html/*
+ docinto html
+ dodoc doc/{*.html,*.png}
+ if use doc; then
+ docinto html/API
+ dodoc doc/API/html/*
fi
+
cmake-utils_src_install
# Ensure that modules are allways in openbabel/${PV}
- pushd "${ED}/usr/$(get_libdir)/openbabel"
+ pushd "${ED}/usr/$(get_libdir)/openbabel" > /dev/null || die
ver=$(ls -d * | grep -E '([0-9]+[.]){2}[0-9]+')
if [ "${ver}" != "${PV}" ] ; then
- ln -s ${ver} ${PV}
+ ln -s ${ver} ${PV} || die
fi
- popd
+ popd > /dev/null || die
}
^ permalink raw reply related [flat|nested] 12+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-chemistry/openbabel/
@ 2020-09-22 11:45 Aisha Tammy
0 siblings, 0 replies; 12+ messages in thread
From: Aisha Tammy @ 2020-09-22 11:45 UTC (permalink / raw
To: gentoo-commits
commit: a88e772ce115f449779d65b81a55d631ce938e8d
Author: Aisha Tammy <gentoo <AT> aisha <DOT> cc>
AuthorDate: Tue Sep 22 11:43:01 2020 +0000
Commit: Aisha Tammy <gentoo <AT> aisha <DOT> cc>
CommitDate: Tue Sep 22 11:45:29 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a88e772c
sci-chemistry/openbabel: drop package
present in ::gentoo
Package-Manager: Portage-3.0.7, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc>
sci-chemistry/openbabel/metadata.xml | 26 --------
sci-chemistry/openbabel/openbabel-9999.ebuild | 91 ---------------------------
2 files changed, 117 deletions(-)
diff --git a/sci-chemistry/openbabel/metadata.xml b/sci-chemistry/openbabel/metadata.xml
deleted file mode 100644
index 1b001391d..000000000
--- a/sci-chemistry/openbabel/metadata.xml
+++ /dev/null
@@ -1,26 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-chemistry@gentoo.org</email>
- <name>Gentoo Chemistry Project</name>
- </maintainer>
- <longdescription>
-Open Babel is a chemical toolbox designed to speak the many languages of
-chemical data. It's an open, collaborative project allowing anyone to
-search, convert, analyze, or store data from molecular modeling, chemistry,
-solid-state materials, biochemistry, or related areas.
-</longdescription>
- <use>
- <flag name="doc">Install API dicumentation.</flag>
- <flag name="openmp">Enable parallelization using OpenMP.</flag>
- <flag name="java">Install Java bindings.</flag>
- <flag name="perl">Install Perl bindings.</flag>
- <flag name="python">Install Python bindings and PyBel.</flag>
- <flag name="ruby">Install Ruby bindings.</flag>
- <flag name="wxwidgets">Build Open Babel GUI.</flag>
- </use>
- <upstream>
- <remote-id type="sourceforge">openbabel</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/sci-chemistry/openbabel/openbabel-9999.ebuild b/sci-chemistry/openbabel/openbabel-9999.ebuild
deleted file mode 100644
index 84b2e6f38..000000000
--- a/sci-chemistry/openbabel/openbabel-9999.ebuild
+++ /dev/null
@@ -1,91 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-WX_GTK_VER="2.8"
-
-inherit cmake-utils eutils git-r3 wxwidgets
-
-DESCRIPTION="Interconverts file formats used in molecular modeling"
-HOMEPAGE="http://openbabel.sourceforge.net/"
-SRC_URI=""
-EGIT_REPO_URI="https://github.com/openbabel/openbabel.git"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS=""
-IUSE="doc java openmp perl python ruby test wxwidgets"
-
-RDEPEND="
- dev-cpp/eigen:3
- dev-libs/libxml2:2
- !sci-chemistry/babel
- sci-libs/inchi
- sys-libs/zlib
- wxwidgets? ( x11-libs/wxGTK:${WX_GTK_VER}[X] )"
-DEPEND="${RDEPEND}
- >=dev-util/cmake-2.4.8
- doc? ( app-doc/doxygen )"
-PDEPEND="
- java? ( sci-chemistry/openbabel-java )
- perl? ( sci-chemistry/openbabel-perl )
- python? ( sci-chemistry/openbabel-python )
- ruby? ( sci-chemistry/openbabel-ruby )"
-
-DOCS="AUTHORS NEWS README.md THANKS doc/*.inc doc/README* doc/*.mol2"
-
-pkg_setup() {
- if use openmp; then
- if [[ $(tc-getCC) == *gcc ]] && ! tc-has-openmp; then
- ewarn "OpenMP is not available in your current selected gcc"
- die "need openmp capable gcc"
- fi
- FORTRAN_NEED_OPENMP=1
- fi
-}
-
-src_configure() {
- local mycmakeargs=""
- mycmakeargs="${mycmakeargs}
- -DOPENBABEL_USE_SYSTEM_INCHI=ON
- -DOPTIMIZE_NATIVE=OFF
- $(cmake-utils_use_enable openmp OPENMP)
- $(cmake-utils_use wxwidgets BUILD_GUI)"
-
- cmake-utils_src_configure
-}
-
-src_test() {
- local mycmakeargs=""
- mycmakeargs="${mycmakeargs}
- -DOPENBABEL_USE_SYSTEM_INCHI=ON
- -DOPTIMIZE_NATIVE=OFF
- -DPYTHON_EXECUTABLE=false
- $(cmake-utils_use wxwidgets BUILD_GUI)
- $(cmake-utils_use_enable openmp OPENMP)
- $(cmake-utils_use_enable test TESTS)"
-
- cmake-utils_src_configure
- cmake-utils_src_compile
- cmake-utils_src_test -E py
-}
-
-src_install() {
- docinto html
- dodoc doc/{*.html,*.png}
- if use doc; then
- docinto html/API
- dodoc doc/API/html/*
- fi
-
- cmake-utils_src_install
-
- # Ensure that modules are allways in openbabel/${PV}
- pushd "${ED}/usr/$(get_libdir)/openbabel" > /dev/null || die
- ver=$(ls -d * | grep -E '([0-9]+[.]){2}[0-9]+')
- if [ "${ver}" != "${PV}" ] ; then
- ln -s ${ver} ${PV} || die
- fi
- popd > /dev/null || die
-}
^ permalink raw reply related [flat|nested] 12+ messages in thread
end of thread, other threads:[~2020-09-22 11:45 UTC | newest]
Thread overview: 12+ messages (download: mbox.gz follow: Atom feed
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2013-09-26 20:27 [gentoo-commits] proj/sci:master commit in: sci-chemistry/openbabel/ Reinis Danne
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2020-09-22 11:45 Aisha Tammy
2016-01-06 7:53 Justin Lecher
2015-09-21 17:44 Justin Lecher
2014-02-14 18:19 Reinis Danne
2014-01-06 18:33 Justin Lecher
2013-11-14 17:15 Reinis Danne
2012-12-06 17:20 Justin Lecher
2011-03-25 17:25 Justin Lecher
2011-03-25 16:38 Justin Lecher
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2011-03-07 12:01 Justin Lecher
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