[gentoo-commits] proj/sci:master commit in: sci-biology/bowtie/

["Nicolas Bock" <nicolasbock@gmail.com>]

commit:     9ee84fa74a5bc48850d98dd49edbe223e8085e5a
Author:     cel <cel.gentoo <AT> gmail <DOT> com>
AuthorDate: Thu Sep 26 19:35:23 2013 +0000
Commit:     Nicolas Bock <nicolasbock <AT> gmail <DOT> com>
CommitDate: Thu Sep 26 19:35:23 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9ee84fa7

sci-biology/bowtie: fixed check for sse2 support.

---
 sci-biology/bowtie/bowtie-2.1.0.ebuild | 21 ++++++++-------------
 1 file changed, 8 insertions(+), 13 deletions(-)

diff --git a/sci-biology/bowtie/bowtie-2.1.0.ebuild b/sci-biology/bowtie/bowtie-2.1.0.ebuild
index c2c5024..26bf770 100644
--- a/sci-biology/bowtie/bowtie-2.1.0.ebuild
+++ b/sci-biology/bowtie/bowtie-2.1.0.ebuild
@@ -4,7 +4,7 @@
 
 EAPI=5
 
-inherit eutils flag-o-matic toolchain-funcs
+inherit eutils toolchain-funcs
 
 DESCRIPTION="An ultrafast memory-efficient short read aligner"
 HOMEPAGE="http://bowtie-bio.sourceforge.net/"
@@ -12,23 +12,19 @@ SRC_URI="mirror://sourceforge/bowtie-bio/${P}-source.zip"
 
 LICENSE="GPL-3"
 SLOT="2"
-IUSE="sse2 examples"
+IUSE="examples"
 KEYWORDS="~amd64 ~x86"
 
-CDEPEND="dev-lang/perl"
-DEPEND="${CDEPEND} \
+RDEPEND="dev-lang/perl"
+DEPEND="${RDEPEND}
 		app-arch/unzip"
-RDEPEND="${CDEPEND}"
 
 S="${WORKDIR}/${PN}2-${PV}"
 
 pkg_pretend() {
-	if ! use sse2 ; then
-		ebegin
-		eerror "bowtie2 requires sse2 support. Please make sure your system supports"
-		eerror "sse2 and enable the sse2 use flag."
-		eend
-		die
+	grep "sse2" /proc/cpuinfo > /dev/null
+	if [[ $? -ne 0 ]] ; then
+		ewarn "Your processor does not support sse2. Bowtie will probably not work on this machine."
 	fi
 }
 
@@ -37,12 +33,11 @@ src_prepare() {
 }
 
 src_compile() {
-	use sse2 && append-cxxflags -msse2
 	emake \
 		CC="$(tc-getCC)" \
 		CPP="$(tc-getCXX)" \
 		EXTRA_FLAGS="${LDFLAGS}" \
-		RELEASE_FLAGS="${CXXFLAGS}"
+		RELEASE_FLAGS="${CXXFLAGS} -msse2"
 }
 
 src_install() {