* [gentoo-commits] proj/sci:master commit in: dev-perl/Bio-BigFile/
@ 2012-02-09 10:24 Martin Mokrejs
0 siblings, 0 replies; 6+ messages in thread
From: Martin Mokrejs @ 2012-02-09 10:24 UTC (permalink / raw
To: gentoo-commits
commit: 7a6871a34850b7c90ff59c9d136df4023b130dca
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Feb 9 10:23:33 2012 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Feb 9 10:23:33 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7a6871a3
dev-perl/Bio-BigFile: new package, initial ebuild, see bug #402835
(Portage version: 2.1.10.45/git/Linux x86_64, unsigned Manifest commit)
---
dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild | 4 ++--
dev-perl/Bio-BigFile/ChangeLog | 8 ++++++++
2 files changed, 10 insertions(+), 2 deletions(-)
diff --git a/dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild b/dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild
index 74d0554..f23ca23 100644
--- a/dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild
+++ b/dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
@@ -9,7 +9,7 @@ inherit perl-module
DESCRIPTION="BigWig and BigBed file perl-based interface for Gbrowse-2"
-#LICENSE="|| ( Artistic GPL-1 GPL-2 GPL-3 )"
+LICENSE="|| ( Artistic-2 GPL-1 GPL-2 GPL-3 )"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
diff --git a/dev-perl/Bio-BigFile/ChangeLog b/dev-perl/Bio-BigFile/ChangeLog
new file mode 100644
index 0000000..7541c3f
--- /dev/null
+++ b/dev-perl/Bio-BigFile/ChangeLog
@@ -0,0 +1,8 @@
+# ChangeLog for dev-perl/Bio-BigFile
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+ 09 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ Bio-BigFile-1.06.ebuild:
+ initial ebuild, see bug #402835
+
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-perl/Bio-BigFile/
@ 2012-05-22 19:43 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2012-05-22 19:43 UTC (permalink / raw
To: gentoo-commits
commit: fe9af8f2b9e1099e6b84ba7009fe7fdfaf6c110d
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue May 22 18:47:01 2012 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue May 22 18:47:01 2012 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=fe9af8f2
dev-perl/Bio-BigFile: Add missing eutils.eclass, bump to EAPI=4, remove unnecessary bits
(Portage version: 2.2.0_alpha107/git/Linux x86_64, unsigned Manifest commit)
---
dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild | 11 ++++++-----
dev-perl/Bio-BigFile/ChangeLog | 3 +++
2 files changed, 9 insertions(+), 5 deletions(-)
diff --git a/dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild b/dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild
index f23ca23..7da6616 100644
--- a/dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild
+++ b/dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild
@@ -2,10 +2,11 @@
# Distributed under the terms of the GNU General Public License v2
# $Header: $
-EAPI=3
+EAPI=4
MODULE_AUTHOR="LDS"
-inherit perl-module
+
+inherit eutils flag-o-matic perl-module
DESCRIPTION="BigWig and BigBed file perl-based interface for Gbrowse-2"
@@ -21,7 +22,7 @@ DEPEND="${RDEPEND}
SRC_TEST="do"
src_prepare(){
- epatch "${FILESDIR}"/Build.PL.patch || die "Failed to patch Build.PL"
+ append-cflags -D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing
+ append-lfs-flags
+ epatch "${FILESDIR}"/Build.PL.patch
}
-
-CFLAGS="${CFLAGS} -D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64"
diff --git a/dev-perl/Bio-BigFile/ChangeLog b/dev-perl/Bio-BigFile/ChangeLog
index 7541c3f..d899200 100644
--- a/dev-perl/Bio-BigFile/ChangeLog
+++ b/dev-perl/Bio-BigFile/ChangeLog
@@ -2,6 +2,9 @@
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 22 May 2012; Justin Lecher <jlec@gentoo.org> Bio-BigFile-1.06.ebuild:
+ Add missing eutils.eclass, bump to EAPI=4, remove unnecessary bits
+
09 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Bio-BigFile-1.06.ebuild:
initial ebuild, see bug #402835
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-perl/Bio-BigFile/
@ 2013-09-20 9:46 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2013-09-20 9:46 UTC (permalink / raw
To: gentoo-commits
commit: e0af50f7ab031a147f05c488f233aab5c6c8321c
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Sep 18 08:32:48 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Sep 20 09:46:03 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e0af50f7
dev-perl/Bio-BigFile: Version BUmp, fix deps
Package-Manager: portage-2.2.6
---
.../{Bio-BigFile-1.06.ebuild => Bio-BigFile-1.07.ebuild} | 9 ++++++---
dev-perl/Bio-BigFile/ChangeLog | 6 +++++-
dev-perl/Bio-BigFile/metadata.xml | 10 +++++-----
3 files changed, 16 insertions(+), 9 deletions(-)
diff --git a/dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild b/dev-perl/Bio-BigFile/Bio-BigFile-1.07.ebuild
similarity index 77%
rename from dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild
rename to dev-perl/Bio-BigFile/Bio-BigFile-1.07.ebuild
index 7da6616..c9264ea 100644
--- a/dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild
+++ b/dev-perl/Bio-BigFile/Bio-BigFile-1.07.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
-EAPI=4
+EAPI=5
MODULE_AUTHOR="LDS"
@@ -15,7 +15,10 @@ SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
-RDEPEND="sci-biology/ucsc-genome-browser"
+RDEPEND="
+ dev-perl/IO-String
+ sci-biology/bioperl
+ sci-biology/ucsc-genome-browser[static-libs]"
DEPEND="${RDEPEND}
virtual/perl-Module-Build"
diff --git a/dev-perl/Bio-BigFile/ChangeLog b/dev-perl/Bio-BigFile/ChangeLog
index d899200..3af2a56 100644
--- a/dev-perl/Bio-BigFile/ChangeLog
+++ b/dev-perl/Bio-BigFile/ChangeLog
@@ -1,7 +1,11 @@
# ChangeLog for dev-perl/Bio-BigFile
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 18 Sep 2013; Justin Lecher <jlec@gentoo.org> -Bio-BigFile-1.06.ebuild,
+ +Bio-BigFile-1.07.ebuild, metadata.xml:
+ Version BUmp, fix deps
+
22 May 2012; Justin Lecher <jlec@gentoo.org> Bio-BigFile-1.06.ebuild:
Add missing eutils.eclass, bump to EAPI=4, remove unnecessary bits
diff --git a/dev-perl/Bio-BigFile/metadata.xml b/dev-perl/Bio-BigFile/metadata.xml
index 07b5255..2bc8930 100644
--- a/dev-perl/Bio-BigFile/metadata.xml
+++ b/dev-perl/Bio-BigFile/metadata.xml
@@ -1,9 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <herd>sci-biology</herd>
- <maintainer>
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-perl/Bio-BigFile/
@ 2013-09-20 9:48 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2013-09-20 9:48 UTC (permalink / raw
To: gentoo-commits
commit: b08815a2f577f4351f11735ece2e6908ff8d9675
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Sep 18 08:32:48 2013 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Sep 20 09:46:51 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b08815a2
dev-perl/Bio-BigFile: Version BUmp, fix deps
Package-Manager: portage-2.2.6
---
.../{Bio-BigFile-1.06.ebuild => Bio-BigFile-1.07.ebuild} | 9 ++++++---
dev-perl/Bio-BigFile/ChangeLog | 6 +++++-
dev-perl/Bio-BigFile/metadata.xml | 10 +++++-----
3 files changed, 16 insertions(+), 9 deletions(-)
diff --git a/dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild b/dev-perl/Bio-BigFile/Bio-BigFile-1.07.ebuild
similarity index 77%
rename from dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild
rename to dev-perl/Bio-BigFile/Bio-BigFile-1.07.ebuild
index 7da6616..c9264ea 100644
--- a/dev-perl/Bio-BigFile/Bio-BigFile-1.06.ebuild
+++ b/dev-perl/Bio-BigFile/Bio-BigFile-1.07.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
-EAPI=4
+EAPI=5
MODULE_AUTHOR="LDS"
@@ -15,7 +15,10 @@ SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
-RDEPEND="sci-biology/ucsc-genome-browser"
+RDEPEND="
+ dev-perl/IO-String
+ sci-biology/bioperl
+ sci-biology/ucsc-genome-browser[static-libs]"
DEPEND="${RDEPEND}
virtual/perl-Module-Build"
diff --git a/dev-perl/Bio-BigFile/ChangeLog b/dev-perl/Bio-BigFile/ChangeLog
index d899200..3af2a56 100644
--- a/dev-perl/Bio-BigFile/ChangeLog
+++ b/dev-perl/Bio-BigFile/ChangeLog
@@ -1,7 +1,11 @@
# ChangeLog for dev-perl/Bio-BigFile
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 18 Sep 2013; Justin Lecher <jlec@gentoo.org> -Bio-BigFile-1.06.ebuild,
+ +Bio-BigFile-1.07.ebuild, metadata.xml:
+ Version BUmp, fix deps
+
22 May 2012; Justin Lecher <jlec@gentoo.org> Bio-BigFile-1.06.ebuild:
Add missing eutils.eclass, bump to EAPI=4, remove unnecessary bits
diff --git a/dev-perl/Bio-BigFile/metadata.xml b/dev-perl/Bio-BigFile/metadata.xml
index 07b5255..2bc8930 100644
--- a/dev-perl/Bio-BigFile/metadata.xml
+++ b/dev-perl/Bio-BigFile/metadata.xml
@@ -1,9 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <herd>sci-biology</herd>
- <maintainer>
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-perl/Bio-BigFile/
@ 2015-06-15 7:24 Justin Lecher
0 siblings, 0 replies; 6+ messages in thread
From: Justin Lecher @ 2015-06-15 7:24 UTC (permalink / raw
To: gentoo-commits
commit: c5ca675ed31cf26a851330649dced4d7823e2307
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Jun 15 07:15:16 2015 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Jun 15 07:15:16 2015 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c5ca675e
dev-perl/Bio-BigFile: Fix dependency problems due to recent mask of perl-core packages
Package-Manager: portage-2.2.20
dev-perl/Bio-BigFile/Bio-BigFile-1.07.ebuild | 4 ++--
dev-perl/Bio-BigFile/ChangeLog | 8 ++++++--
dev-perl/Bio-BigFile/metadata.xml | 10 +++++-----
3 files changed, 13 insertions(+), 9 deletions(-)
diff --git a/dev-perl/Bio-BigFile/Bio-BigFile-1.07.ebuild b/dev-perl/Bio-BigFile/Bio-BigFile-1.07.ebuild
index 5149f7a..c9e5d20 100644
--- a/dev-perl/Bio-BigFile/Bio-BigFile-1.07.ebuild
+++ b/dev-perl/Bio-BigFile/Bio-BigFile-1.07.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
@@ -20,7 +20,7 @@ RDEPEND="
sci-biology/bioperl
sci-biology/ucsc-genome-browser[static-libs]"
DEPEND="${RDEPEND}
- virtual/perl-Module-Build"
+ dev-perl/Module-Build"
SRC_TEST="do"
diff --git a/dev-perl/Bio-BigFile/ChangeLog b/dev-perl/Bio-BigFile/ChangeLog
index df9646d..4d69032 100644
--- a/dev-perl/Bio-BigFile/ChangeLog
+++ b/dev-perl/Bio-BigFile/ChangeLog
@@ -1,7 +1,12 @@
# ChangeLog for dev-perl/Bio-BigFile
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: $
+ 15 Jun 2015; Justin Lecher <jlec@gentoo.org> Bio-BigFile-1.07.ebuild,
+ metadata.xml:
+ dev-perl/Bio-BigFile: Fix dependency problems due to recent mask of perl-core
+ packages
+
18 Sep 2013; Justin Lecher <jlec@gentoo.org> -Bio-BigFile-1.06.ebuild,
+Bio-BigFile-1.07.ebuild, metadata.xml:
Version Bump, fix deps
@@ -12,4 +17,3 @@
09 Feb 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Bio-BigFile-1.06.ebuild:
initial ebuild, see bug #402835
-
diff --git a/dev-perl/Bio-BigFile/metadata.xml b/dev-perl/Bio-BigFile/metadata.xml
index 2bc8930..07b5255 100644
--- a/dev-perl/Bio-BigFile/metadata.xml
+++ b/dev-perl/Bio-BigFile/metadata.xml
@@ -1,9 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <herd>sci-biology</herd>
- <maintainer>
- <email>mmokrejs@fold.natur.cuni.cz</email>
- <name>Martin Mokrejs</name>
- </maintainer>
+ <herd>sci-biology</herd>
+ <maintainer>
+ <email>mmokrejs@fold.natur.cuni.cz</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
</pkgmetadata>
^ permalink raw reply related [flat|nested] 6+ messages in thread
* [gentoo-commits] proj/sci:master commit in: dev-perl/Bio-BigFile/
@ 2021-03-03 14:13 Andrew Ammerlaan
0 siblings, 0 replies; 6+ messages in thread
From: Andrew Ammerlaan @ 2021-03-03 14:13 UTC (permalink / raw
To: gentoo-commits
commit: 7a14f4a95706212353ced47ce9f471bc96ff30f3
Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Wed Mar 3 14:12:57 2021 +0000
Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Wed Mar 3 14:12:57 2021 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7a14f4a9
dev-perl/Bio-BigFile: EAPI bump
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>
dev-perl/Bio-BigFile/Bio-BigFile-1.07.ebuild | 15 +++++++++------
1 file changed, 9 insertions(+), 6 deletions(-)
diff --git a/dev-perl/Bio-BigFile/Bio-BigFile-1.07.ebuild b/dev-perl/Bio-BigFile/Bio-BigFile-1.07.ebuild
index 02c7306c5..d695850b9 100644
--- a/dev-perl/Bio-BigFile/Bio-BigFile-1.07.ebuild
+++ b/dev-perl/Bio-BigFile/Bio-BigFile-1.07.ebuild
@@ -1,18 +1,17 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
+EAPI=7
-MODULE_AUTHOR="LDS"
+DIST_AUTHOR="LDS"
-inherit eutils flag-o-matic perl-module
+inherit flag-o-matic perl-module
DESCRIPTION="BigWig and BigBed file perl-based interface for Gbrowse-2"
LICENSE="|| ( Artistic-2 GPL-1 GPL-2 GPL-3 )"
SLOT="0"
KEYWORDS="~amd64 ~x86"
-IUSE=""
RDEPEND="
dev-perl/IO-String
@@ -23,8 +22,12 @@ DEPEND="${RDEPEND}
SRC_TEST="do"
+PATCHES=(
+ "${FILESDIR}"/Build.PL.patch
+)
+
src_prepare(){
append-cflags -D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing
append-lfs-flags
- epatch "${FILESDIR}"/Build.PL.patch
+ default
}
^ permalink raw reply related [flat|nested] 6+ messages in thread
end of thread, other threads:[~2021-03-03 14:13 UTC | newest]
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