From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 780331381F3 for ; Fri, 13 Sep 2013 16:52:05 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 170FFE09E0; Fri, 13 Sep 2013 16:52:03 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 8A403E09E0 for ; Fri, 13 Sep 2013 16:52:02 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 1D05233E788 for ; Fri, 13 Sep 2013 16:52:01 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id BC959E468F for ; Fri, 13 Sep 2013 16:51:59 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1379091213.58b3cd84dbafc6fb04a305a29889b3332d9890e5.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/files/, sci-biology/ncbi-tools++/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/ncbi-tools++/ChangeLog sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-creaders-linking.patch sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild X-VCS-Directories: sci-biology/ncbi-tools++/files/ sci-biology/ncbi-tools++/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: 58b3cd84dbafc6fb04a305a29889b3332d9890e5 X-VCS-Branch: master Date: Fri, 13 Sep 2013 16:51:59 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 3c9bd985-84ae-4396-9843-58c578514108 X-Archives-Hash: 865371cc30bb7cf0120ba752ae102bd7 commit: 58b3cd84dbafc6fb04a305a29889b3332d9890e5 Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Fri Sep 13 16:53:33 2013 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Fri Sep 13 16:53:33 2013 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=58b3cd84 No, the fix-creaders-linking is needed for 12.0.0 as well. --- sci-biology/ncbi-tools++/ChangeLog | 14 ++++++++++++++ .../files/ncbi-tools++-12.0.0-fix-creaders-linking.patch | 10 ++++++++++ sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild | 1 + 3 files changed, 25 insertions(+) diff --git a/sci-biology/ncbi-tools++/ChangeLog b/sci-biology/ncbi-tools++/ChangeLog index 711ef6c..2e245b3 100644 --- a/sci-biology/ncbi-tools++/ChangeLog +++ b/sci-biology/ncbi-tools++/ChangeLog @@ -3,6 +3,20 @@ # $Header: $ 13 Sep 2013; Martin Mokrejs + ncbi-tools++-12.0.0.ebuild, + +files/ncbi-tools++-12.0.0-fix-creaders-linking.patch: + No, the fix-creaders-linking is needed for 12.0.0 as well. + +*ncbi-tools++-12.0.0 (13 Sep 2013) + + 13 Sep 2013; Martin Mokrejs + +ncbi-tools++-12.0.0.ebuild, +files/ncbi-tools++-12.0.0-as-needed.patch, + +files/ncbi-tools++-12.0.0-conf-opts.patch: + Latest release which needs so far only the two Gentoo patches. Would + be better to drop ${PV} from their filename to avoid their duplication + I think. + + 13 Sep 2013; Martin Mokrejs ncbi-tools++-9.0.0-r1.ebuild, +files/ncbi-tools++-9.0.0-fix-creaders-linking.patch: add glew to dependencies inferrred via mesa diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-creaders-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-creaders-linking.patch new file mode 100644 index 0000000..1380764 --- /dev/null +++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-12.0.0-fix-creaders-linking.patch @@ -0,0 +1,10 @@ +--- ncbi_cxx--9_0_0/src/objtools/alnmgr/demo/Makefile.alnmrg.app (revision 413271) ++++ ncbi_cxx--9_0_0/src/objtools/alnmgr/demo/Makefile.alnmrg.app (working copy) +@@ -4,7 +4,7 @@ + APP = alnmrg + SRC = alnmrg + LIB = xalnmgr xobjread ncbi_xloader_blastdb seqdb xobjutil submit blastdb \ +- tables $(OBJMGR_LIBS) ++ tables creaders $(OBJMGR_LIBS) + + LIBS = $(CMPRS_LIBS) $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS) diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild index 8121a79..33ee6fb 100644 --- a/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild +++ b/sci-biology/ncbi-tools++/ncbi-tools++-12.0.0.ebuild @@ -105,6 +105,7 @@ src_prepare() { local PATCHES=( "${FILESDIR}"/${P}-conf-opts.patch "${FILESDIR}"/${P}-as-needed.patch + "${FILESDIR}"/${P}-fix-creaders-linking.patch ) epatch ${PATCHES[@]}