From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id DE0B51381F3 for ; Wed, 11 Sep 2013 20:43:36 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id D3F51E07F5; Wed, 11 Sep 2013 20:43:33 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 5310EE07F5 for ; Wed, 11 Sep 2013 20:43:33 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 05B8033EB20 for ; Wed, 11 Sep 2013 20:43:32 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id B1265E468F for ; Wed, 11 Sep 2013 20:43:30 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: <1378932147.a044e1abac5a0b7d4e2ed308b349c08d932bed7d.mmokrejs@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/biopython/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/biopython/biopython-1.62.ebuild sci-biology/biopython/metadata.xml X-VCS-Directories: sci-biology/biopython/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: a044e1abac5a0b7d4e2ed308b349c08d932bed7d X-VCS-Branch: master Date: Wed, 11 Sep 2013 20:43:30 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: ecfacb68-a4ce-4c56-89a3-25ea9c0384fe X-Archives-Hash: d9afc61df3d16d7821d9d2681afd2c3c commit: a044e1abac5a0b7d4e2ed308b349c08d932bed7d Author: Martin Mokrejš fold natur cuni cz> AuthorDate: Wed Sep 11 20:42:27 2013 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Wed Sep 11 20:42:27 2013 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a044e1ab sci-biology/biopython-1.62: version bump --- sci-biology/biopython/biopython-1.62.ebuild | 49 +++++++++++++++++++++++++++++ sci-biology/biopython/metadata.xml | 5 +++ 2 files changed, 54 insertions(+) diff --git a/sci-biology/biopython/biopython-1.62.ebuild b/sci-biology/biopython/biopython-1.62.ebuild new file mode 100644 index 0000000..9413e77 --- /dev/null +++ b/sci-biology/biopython/biopython-1.62.ebuild @@ -0,0 +1,49 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.61.ebuild,v 1.3 2013/07/02 12:47:34 jlec Exp $ + +EAPI=5 + +PYTHON_COMPAT=( python{2_5,2_6,2_7,3_3} ) + +inherit distutils-r1 + +DESCRIPTION="Python modules for computational molecular biology" +HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/" +SRC_URI="http://biopython.org/DIST/biopython-1.62.tar.gz" + +LICENSE="HPND" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" +IUSE="mysql postgres" + +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND="${PYTHON_DEPS} + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] + dev-python/reportlab[${PYTHON_USEDEP}] + media-gfx/pydot[${PYTHON_USEDEP}] + mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] ) + postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )" +DEPEND="${RDEPEND} + sys-devel/flex" + +DOCS=( CONTRIB DEPRECATED NEWS README ) +S="${WORKDIR}/biopython-1.62" + +python_test() { + cd Tests + ${PYTHON} run_tests.py +} + +python_install_all() { + distutils-r1_python_install_all + + insinto /usr/share/doc/${PF} + doins -r Doc/* + insinto /usr/share/${PN} + cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die +} diff --git a/sci-biology/biopython/metadata.xml b/sci-biology/biopython/metadata.xml new file mode 100644 index 0000000..f17a827 --- /dev/null +++ b/sci-biology/biopython/metadata.xml @@ -0,0 +1,5 @@ + + + + sci-biology +