* [gentoo-commits] proj/sci:master commit in: sci-biology/biopython/
@ 2013-09-11 20:43 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2013-09-11 20:43 UTC (permalink / raw
To: gentoo-commits
commit: a044e1abac5a0b7d4e2ed308b349c08d932bed7d
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Sep 11 20:42:27 2013 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Sep 11 20:42:27 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a044e1ab
sci-biology/biopython-1.62: version bump
---
sci-biology/biopython/biopython-1.62.ebuild | 49 +++++++++++++++++++++++++++++
sci-biology/biopython/metadata.xml | 5 +++
2 files changed, 54 insertions(+)
diff --git a/sci-biology/biopython/biopython-1.62.ebuild b/sci-biology/biopython/biopython-1.62.ebuild
new file mode 100644
index 0000000..9413e77
--- /dev/null
+++ b/sci-biology/biopython/biopython-1.62.ebuild
@@ -0,0 +1,49 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.61.ebuild,v 1.3 2013/07/02 12:47:34 jlec Exp $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_5,2_6,2_7,3_3} )
+
+inherit distutils-r1
+
+DESCRIPTION="Python modules for computational molecular biology"
+HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/"
+SRC_URI="http://biopython.org/DIST/biopython-1.62.tar.gz"
+
+LICENSE="HPND"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+IUSE="mysql postgres"
+
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+RDEPEND="${PYTHON_DEPS}
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/networkx[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/pygraphviz[${PYTHON_USEDEP}]
+ dev-python/reportlab[${PYTHON_USEDEP}]
+ media-gfx/pydot[${PYTHON_USEDEP}]
+ mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] )
+ postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )"
+DEPEND="${RDEPEND}
+ sys-devel/flex"
+
+DOCS=( CONTRIB DEPRECATED NEWS README )
+S="${WORKDIR}/biopython-1.62"
+
+python_test() {
+ cd Tests
+ ${PYTHON} run_tests.py
+}
+
+python_install_all() {
+ distutils-r1_python_install_all
+
+ insinto /usr/share/doc/${PF}
+ doins -r Doc/*
+ insinto /usr/share/${PN}
+ cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
+}
diff --git a/sci-biology/biopython/metadata.xml b/sci-biology/biopython/metadata.xml
new file mode 100644
index 0000000..f17a827
--- /dev/null
+++ b/sci-biology/biopython/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/biopython/
@ 2013-09-11 20:44 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2013-09-11 20:44 UTC (permalink / raw
To: gentoo-commits
commit: e96ba961cf36f81e55d473d3d1b98f25c6d4c4c8
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Sep 11 20:44:14 2013 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Sep 11 20:44:14 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e96ba961
sci-biology/biopython-1.62: version bump
---
sci-biology/biopython/ChangeLog | 10 ++++++++++
1 file changed, 10 insertions(+)
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog
new file mode 100644
index 0000000..0f1dbf1
--- /dev/null
+++ b/sci-biology/biopython/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/biopython
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*biopython-1.62 (11 Sep 2013)
+
+ 11 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +biopython-1.62.ebuild, +metadata.xml:
+ biopython-1.62.ebuild Manifest metadata.xml
+
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/biopython/
@ 2013-09-17 17:24 Sebastien Fabbro
0 siblings, 0 replies; 5+ messages in thread
From: Sebastien Fabbro @ 2013-09-17 17:24 UTC (permalink / raw
To: gentoo-commits
commit: c7b21628d6270b5fbff4d1c188424096f6398b6d
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Sep 17 16:08:34 2013 +0000
Commit: Sebastien Fabbro <bicatali <AT> gentoo <DOT> org>
CommitDate: Tue Sep 17 16:08:34 2013 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=c7b21628
InCVs
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
---
sci-biology/biopython/ChangeLog | 10 ------
sci-biology/biopython/biopython-1.62.ebuild | 49 -----------------------------
sci-biology/biopython/metadata.xml | 5 ---
3 files changed, 64 deletions(-)
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog
deleted file mode 100644
index 0f1dbf1..0000000
--- a/sci-biology/biopython/ChangeLog
+++ /dev/null
@@ -1,10 +0,0 @@
-# ChangeLog for sci-biology/biopython
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*biopython-1.62 (11 Sep 2013)
-
- 11 Sep 2013; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
- +biopython-1.62.ebuild, +metadata.xml:
- biopython-1.62.ebuild Manifest metadata.xml
-
diff --git a/sci-biology/biopython/biopython-1.62.ebuild b/sci-biology/biopython/biopython-1.62.ebuild
deleted file mode 100644
index 9413e77..0000000
--- a/sci-biology/biopython/biopython-1.62.ebuild
+++ /dev/null
@@ -1,49 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.61.ebuild,v 1.3 2013/07/02 12:47:34 jlec Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_5,2_6,2_7,3_3} )
-
-inherit distutils-r1
-
-DESCRIPTION="Python modules for computational molecular biology"
-HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/"
-SRC_URI="http://biopython.org/DIST/biopython-1.62.tar.gz"
-
-LICENSE="HPND"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE="mysql postgres"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="${PYTHON_DEPS}
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]
- dev-python/reportlab[${PYTHON_USEDEP}]
- media-gfx/pydot[${PYTHON_USEDEP}]
- mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] )
- postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}
- sys-devel/flex"
-
-DOCS=( CONTRIB DEPRECATED NEWS README )
-S="${WORKDIR}/biopython-1.62"
-
-python_test() {
- cd Tests
- ${PYTHON} run_tests.py
-}
-
-python_install_all() {
- distutils-r1_python_install_all
-
- insinto /usr/share/doc/${PF}
- doins -r Doc/*
- insinto /usr/share/${PN}
- cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
-}
diff --git a/sci-biology/biopython/metadata.xml b/sci-biology/biopython/metadata.xml
deleted file mode 100644
index f17a827..0000000
--- a/sci-biology/biopython/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <herd>sci-biology</herd>
-</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/biopython/
@ 2014-06-03 0:26 Martin Mokrejs
0 siblings, 0 replies; 5+ messages in thread
From: Martin Mokrejs @ 2014-06-03 0:26 UTC (permalink / raw
To: gentoo-commits
commit: 10c67b74e2889910c6b679fbdaccbb3326adc635
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Jun 3 00:23:59 2014 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Jun 3 00:23:59 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=10c67b74
sci-biology/biopython-1.64: version bump with some notable bugfixes
Package-Manager: portage-2.2.7
---
sci-biology/biopython/ChangeLog | 10 +++++
sci-biology/biopython/biopython-1.63-r2.ebuild | 54 ++++++++++++++++++++++++++
sci-biology/biopython/biopython-1.64.ebuild | 54 ++++++++++++++++++++++++++
sci-biology/biopython/metadata.xml | 5 +++
4 files changed, 123 insertions(+)
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog
new file mode 100644
index 0000000..c60a939
--- /dev/null
+++ b/sci-biology/biopython/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/biopython
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*biopython-1.63-r2 (03 Jun 2014)
+*biopython-1.64 (03 Jun 2014)
+
+ 03 Jun 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+ +biopython-1.63-r2.ebuild, +biopython-1.64.ebuild, +metadata.xml:
+ sci-biology/biopython-1.64: version bump with some notable bugfixes
diff --git a/sci-biology/biopython/biopython-1.63-r2.ebuild b/sci-biology/biopython/biopython-1.63-r2.ebuild
new file mode 100644
index 0000000..435c757
--- /dev/null
+++ b/sci-biology/biopython/biopython-1.63-r2.ebuild
@@ -0,0 +1,54 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.62.ebuild,v 1.1 2013/09/17 16:07:56 jlec Exp $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7} )
+
+inherit distutils-r1 eutils
+
+DESCRIPTION="Python modules for computational molecular biology"
+HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/"
+SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"
+
+LICENSE="HPND"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+IUSE="mysql postgres"
+
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+RDEPEND="${PYTHON_DEPS}
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/networkx[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/rdflib[${PYTHON_USEDEP}]
+ dev-python/pygraphviz[${PYTHON_USEDEP}]
+ dev-python/reportlab[${PYTHON_USEDEP}]
+ media-gfx/pydot[${PYTHON_USEDEP}]
+ mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] )
+ postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )"
+DEPEND="${RDEPEND}
+ sys-devel/flex"
+
+DOCS=( CONTRIB DEPRECATED NEWS README Doc/. )
+
+src_prepare() {
+ epatch "${FILESDIR}/SffIO_error_in_check_eof.patch"
+ epatch "${FILESDIR}/SffIO_broken_padding.patch"
+ epatch "${FILESDIR}/SffIO-crossed-trimpoints.patch"
+ distutils-r1_src_prepare
+}
+
+python_test() {
+ cd Tests || die
+ ${PYTHON} run_tests.py || die
+}
+
+python_install_all() {
+ distutils-r1_python_install_all
+
+ dodir /usr/share/${PN}
+ cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
+}
diff --git a/sci-biology/biopython/biopython-1.64.ebuild b/sci-biology/biopython/biopython-1.64.ebuild
new file mode 100644
index 0000000..366fa7a
--- /dev/null
+++ b/sci-biology/biopython/biopython-1.64.ebuild
@@ -0,0 +1,54 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.62.ebuild,v 1.1 2013/09/17 16:07:56 jlec Exp $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7} )
+
+inherit distutils-r1 eutils
+
+DESCRIPTION="Python modules for computational molecular biology"
+HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/"
+SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"
+
+LICENSE="HPND"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+IUSE="mysql postgres"
+
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+RDEPEND="${PYTHON_DEPS}
+ dev-python/matplotlib[${PYTHON_USEDEP}]
+ dev-python/networkx[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ dev-python/rdflib[${PYTHON_USEDEP}]
+ dev-python/pygraphviz[${PYTHON_USEDEP}]
+ dev-python/reportlab[${PYTHON_USEDEP}]
+ media-gfx/pydot[${PYTHON_USEDEP}]
+ mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] )
+ postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )"
+DEPEND="${RDEPEND}
+ sys-devel/flex"
+
+DOCS=( CONTRIB DEPRECATED NEWS README Doc/. )
+
+#src_prepare() {
+# epatch "${FILESDIR}/SffIO_error_in_check_eof.patch"
+# epatch "${FILESDIR}/SffIO_broken_padding.patch"
+# epatch "${FILESDIR}/SffIO-crossed-trimpoints.patch"
+# distutils-r1_src_prepare
+#}
+
+python_test() {
+ cd Tests || die
+ ${PYTHON} run_tests.py || die
+}
+
+python_install_all() {
+ distutils-r1_python_install_all
+
+ dodir /usr/share/${PN}
+ cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
+}
diff --git a/sci-biology/biopython/metadata.xml b/sci-biology/biopython/metadata.xml
new file mode 100644
index 0000000..f17a827
--- /dev/null
+++ b/sci-biology/biopython/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-biology</herd>
+</pkgmetadata>
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-biology/biopython/
@ 2014-06-03 7:06 Justin Lecher
0 siblings, 0 replies; 5+ messages in thread
From: Justin Lecher @ 2014-06-03 7:06 UTC (permalink / raw
To: gentoo-commits
commit: b65cb3eec74d50842909ac65d6e0d156e1a4e910
Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Tue Jun 3 07:06:25 2014 +0000
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Tue Jun 3 07:06:25 2014 +0000
URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b65cb3ee
Moved to tree
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
---
sci-biology/biopython/ChangeLog | 10 -----
sci-biology/biopython/biopython-1.63-r2.ebuild | 54 --------------------------
sci-biology/biopython/biopython-1.64.ebuild | 54 --------------------------
sci-biology/biopython/metadata.xml | 5 ---
4 files changed, 123 deletions(-)
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog
deleted file mode 100644
index c60a939..0000000
--- a/sci-biology/biopython/ChangeLog
+++ /dev/null
@@ -1,10 +0,0 @@
-# ChangeLog for sci-biology/biopython
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*biopython-1.63-r2 (03 Jun 2014)
-*biopython-1.64 (03 Jun 2014)
-
- 03 Jun 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
- +biopython-1.63-r2.ebuild, +biopython-1.64.ebuild, +metadata.xml:
- sci-biology/biopython-1.64: version bump with some notable bugfixes
diff --git a/sci-biology/biopython/biopython-1.63-r2.ebuild b/sci-biology/biopython/biopython-1.63-r2.ebuild
deleted file mode 100644
index 435c757..0000000
--- a/sci-biology/biopython/biopython-1.63-r2.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.62.ebuild,v 1.1 2013/09/17 16:07:56 jlec Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-
-inherit distutils-r1 eutils
-
-DESCRIPTION="Python modules for computational molecular biology"
-HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/"
-SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"
-
-LICENSE="HPND"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE="mysql postgres"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="${PYTHON_DEPS}
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/rdflib[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]
- dev-python/reportlab[${PYTHON_USEDEP}]
- media-gfx/pydot[${PYTHON_USEDEP}]
- mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] )
- postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}
- sys-devel/flex"
-
-DOCS=( CONTRIB DEPRECATED NEWS README Doc/. )
-
-src_prepare() {
- epatch "${FILESDIR}/SffIO_error_in_check_eof.patch"
- epatch "${FILESDIR}/SffIO_broken_padding.patch"
- epatch "${FILESDIR}/SffIO-crossed-trimpoints.patch"
- distutils-r1_src_prepare
-}
-
-python_test() {
- cd Tests || die
- ${PYTHON} run_tests.py || die
-}
-
-python_install_all() {
- distutils-r1_python_install_all
-
- dodir /usr/share/${PN}
- cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
-}
diff --git a/sci-biology/biopython/biopython-1.64.ebuild b/sci-biology/biopython/biopython-1.64.ebuild
deleted file mode 100644
index 366fa7a..0000000
--- a/sci-biology/biopython/biopython-1.64.ebuild
+++ /dev/null
@@ -1,54 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.62.ebuild,v 1.1 2013/09/17 16:07:56 jlec Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_6,2_7} )
-
-inherit distutils-r1 eutils
-
-DESCRIPTION="Python modules for computational molecular biology"
-HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/"
-SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"
-
-LICENSE="HPND"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE="mysql postgres"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="${PYTHON_DEPS}
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/rdflib[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]
- dev-python/reportlab[${PYTHON_USEDEP}]
- media-gfx/pydot[${PYTHON_USEDEP}]
- mysql? ( dev-python/mysql-python[${PYTHON_USEDEP}] )
- postgres? ( dev-python/psycopg[${PYTHON_USEDEP}] )"
-DEPEND="${RDEPEND}
- sys-devel/flex"
-
-DOCS=( CONTRIB DEPRECATED NEWS README Doc/. )
-
-#src_prepare() {
-# epatch "${FILESDIR}/SffIO_error_in_check_eof.patch"
-# epatch "${FILESDIR}/SffIO_broken_padding.patch"
-# epatch "${FILESDIR}/SffIO-crossed-trimpoints.patch"
-# distutils-r1_src_prepare
-#}
-
-python_test() {
- cd Tests || die
- ${PYTHON} run_tests.py || die
-}
-
-python_install_all() {
- distutils-r1_python_install_all
-
- dodir /usr/share/${PN}
- cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
-}
diff --git a/sci-biology/biopython/metadata.xml b/sci-biology/biopython/metadata.xml
deleted file mode 100644
index f17a827..0000000
--- a/sci-biology/biopython/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <herd>sci-biology</herd>
-</pkgmetadata>
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2013-09-11 20:43 [gentoo-commits] proj/sci:master commit in: sci-biology/biopython/ Martin Mokrejs
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2013-09-11 20:44 Martin Mokrejs
2013-09-17 17:24 Sebastien Fabbro
2014-06-03 0:26 Martin Mokrejs
2014-06-03 7:06 Justin Lecher
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