From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 27E6B138202 for ; Wed, 4 Sep 2013 05:11:41 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 3BEE0E1228; Wed, 4 Sep 2013 05:11:40 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id 612CFE1224 for ; Wed, 4 Sep 2013 05:11:39 +0000 (UTC) Received: from hornbill.gentoo.org (hornbill.gentoo.org [94.100.119.163]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 579E133EAF1 for ; Wed, 4 Sep 2013 05:11:38 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by hornbill.gentoo.org (Postfix) with ESMTP id F3BB5E545C for ; Wed, 4 Sep 2013 05:11:36 +0000 (UTC) From: "Kacper Kowalik" To: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: 8bit Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Kacper Kowalik" Message-ID: <1377836203.d7175ca43809b905367b6925ac240b7feb9feadc.xarthisius@gentoo> Subject: [gentoo-commits] proj/sci:master commit in: / X-VCS-Repository: proj/sci X-VCS-Committer: xarthisius X-VCS-Committer-Name: Kacper Kowalik X-VCS-Revision: d7175ca43809b905367b6925ac240b7feb9feadc X-VCS-Branch: master Date: Wed, 4 Sep 2013 05:11:36 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org X-Archives-Salt: 03593e4a-9a44-43c0-af54-38b30d55d7cf X-Archives-Hash: 02692721be944dc5dc60938281d3146e commit: d7175ca43809b905367b6925ac240b7feb9feadc Author: Horea Christian mail ru> AuthorDate: Fri Aug 30 04:16:43 2013 +0000 Commit: Kacper Kowalik gentoo org> CommitDate: Fri Aug 30 04:16:43 2013 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=d7175ca4 Merge branch 'master' of git://github.com/gentoo-science/sci into psychopy app-doc/lapack-docs/ChangeLog | 6 +- app-doc/lapack-docs/Manifest | 4 +- app-doc/lapack-docs/lapack-docs-3.3-r1.ebuild | 6 +- dev-cpp/eigen/ChangeLog | 7 + dev-cpp/eigen/Manifest | 3 +- .../{eigen-3.1.3-r1.ebuild => eigen-3.1.4.ebuild} | 0 .../{eigen-3.1.3-r1.ebuild => eigen-3.2.0.ebuild} | 0 dev-util/ccache/ChangeLog | 8 + ...ache-3.1.9-r1.ebuild => ccache-3.1.9-r2.ebuild} | 6 +- dev-util/ccache/files/ccache-config-2 | 7 +- dev-util/nvidia-cuda-toolkit/ChangeLog | 190 ------------- dev-util/nvidia-cuda-toolkit/Manifest | 2 - dev-util/nvidia-cuda-toolkit/files/cuda-config.in | 28 -- .../files/nvidia-cuda-toolkit-2.2-enum_fix.patch | 42 --- .../files/nvidia-cuda-toolkit-3.0-enum_fix.patch | 54 ---- .../files/nvidia-cuda-toolkit-3.1-enum_fix.patch | 24 -- dev-util/nvidia-cuda-toolkit/metadata.xml | 18 -- .../nvidia-cuda-toolkit-5.5.11.ebuild | 142 ---------- licenses/nmrpipe | 23 ++ sci-chemistry/chemBuild/ChangeLog | 5 + sci-chemistry/chemBuild/Manifest | 1 + ...emBuild-1.0.2.ebuild => chemBuild-1.0.3.ebuild} | 0 sci-chemistry/chimera-bin/ChangeLog | 8 +- sci-chemistry/chimera-bin/Manifest | 2 + sci-chemistry/chimera-bin/chimera-bin-1.6.2.ebuild | 8 +- ...era-bin-1.6.2.ebuild => chimera-bin-1.8.ebuild} | 8 +- sci-chemistry/chimera-bin/metadata.xml | 2 +- sci-chemistry/coot/ChangeLog | 6 + sci-chemistry/coot/coot-9999.ebuild | 6 + sci-chemistry/coot/files/9999-pc.patch | 51 ++-- sci-chemistry/dl_poly/ChangeLog | 14 + sci-chemistry/dl_poly/Manifest | 2 + sci-chemistry/dl_poly/dl_poly-1.9.ebuild | 35 +++ sci-chemistry/dl_poly/dl_poly-4.05.ebuild | 41 +++ .../{votca-csgapps => dl_poly}/metadata.xml | 0 sci-chemistry/gnome-chemistry-utils/ChangeLog | 4 + .../gnome-chemistry-utils-0.14.2-r1.ebuild | 1 + sci-chemistry/jmol/ChangeLog | 54 ---- sci-chemistry/jmol/Manifest | 1 - .../jmol/files/12.0.45/jmol-manifest.patch | 96 ------- sci-chemistry/jmol/files/12.0.45/jmol-nointl.patch | 313 --------------------- sci-chemistry/jmol/files/caffeine.xyz | 26 -- sci-chemistry/jmol/files/index.html | 14 - .../jmol/files/selfSignedCertificate.store | Bin 1516 -> 0 bytes sci-chemistry/jmol/jmol-12.0.45-r1.ebuild | 122 -------- sci-chemistry/jmol/metadata.xml | 13 - sci-chemistry/nmrpipe/ChangeLog | 6 + sci-chemistry/nmrpipe/Manifest | 6 +- ....patch => nmrpipe-8.1.2013.218.23.09-lib.patch} | 0 ...r3.ebuild => nmrpipe-8.1.2013.218.23.09.ebuild} | 2 +- sci-chemistry/panav/ChangeLog | 10 + sci-chemistry/panav/Manifest | 1 + sci-chemistry/panav/metadata.xml | 30 ++ sci-chemistry/panav/panav-0.20130730.ebuild | 34 +++ sci-chemistry/phenix-bin/ChangeLog | 3 + .../phenix-bin/phenix-bin-1.8.2.1309.ebuild | 4 +- sci-chemistry/specView/ChangeLog | 5 + sci-chemistry/specView/Manifest | 1 + ...specView-1.0.2.ebuild => specView-1.0.3.ebuild} | 0 sci-chemistry/unio/ChangeLog | 6 +- sci-chemistry/unio/Manifest | 3 +- sci-chemistry/unio/metadata.xml | 2 +- sci-chemistry/unio/unio-2.0.1-r1.ebuild | 71 ----- sci-chemistry/unio/unio-2.0.2-r1.ebuild | 62 ++++ sci-chemistry/unio/unio-2.0.2.ebuild | 71 ----- sci-libs/armadillo/ChangeLog | 6 + sci-libs/armadillo/Manifest | 2 +- ...llo-3.900.6.ebuild => armadillo-3.910.0.ebuild} | 0 sci-libs/avogadro-libs/ChangeLog | 8 + sci-libs/avogadro-libs/avogadro-libs-0.6.0.ebuild | 19 +- .../files/avogadro-libs-0.6.0-underlinking.patch | 14 + sci-libs/avogadro-libs/metadata.xml | 3 + sci-libs/coinor-mp/ChangeLog | 6 + sci-libs/coinor-mp/Manifest | 2 +- ...inor-mp-1.6.0.ebuild => coinor-mp-1.7.0.ebuild} | 4 +- sci-libs/gsl/ChangeLog | 7 + sci-libs/gsl/Manifest | 2 +- ...5-cblas.patch => gsl-1.16-cblas-external.patch} | 181 ++++++------ .../gsl/{gsl-1.15-r3.ebuild => gsl-1.16-r1.ebuild} | 13 +- sci-libs/gsl/metadata.xml | 12 +- .../{libsufr-0.4.1.ebuild => libsufr-0.5.2.ebuild} | 0 sci-libs/o2scl/ChangeLog | 6 + sci-libs/o2scl/Manifest | 2 +- .../{o2scl-0.912.ebuild => o2scl-0.913.ebuild} | 3 +- sci-libs/openblas/ChangeLog | 6 + sci-libs/openblas/Manifest | 2 +- ...openblas-0.2.7.ebuild => openblas-0.2.8.ebuild} | 25 +- sci-libs/openblas/openblas-9999.ebuild | 22 +- sci-libs/scikits_image/ChangeLog | 7 + sci-libs/scikits_image/scikits_image-9999.ebuild | 6 +- sci-mathematics/alt-ergo/ChangeLog | 7 + sci-mathematics/alt-ergo/Manifest | 2 +- ...alt-ergo-0.95.ebuild => alt-ergo-0.95.1.ebuild} | 2 +- sci-mathematics/alt-ergo/metadata.xml | 3 +- sci-mathematics/bertini/ChangeLog | 17 -- sci-mathematics/bertini/Manifest | 2 - sci-mathematics/bertini/bertini-1.3.1.ebuild | 54 ---- sci-mathematics/bertini/metadata.xml | 29 -- sci-mathematics/gappa/ChangeLog | 7 +- sci-mathematics/gappa/Manifest | 2 +- sci-mathematics/gappa/gappa-0.16.3.ebuild | 50 ---- sci-mathematics/gappa/gappa-1.0.0.ebuild | 37 +++ sci-physics/espresso++/ChangeLog | 3 + sci-physics/espresso++/espresso++-9999.ebuild | 3 + sci-physics/lammps/ChangeLog | 5 + sci-physics/lammps/Manifest | 1 + ...mmps-20130708.ebuild => lammps-20130816.ebuild} | 0 sys-cluster/charmdebug/ChangeLog | 15 + sys-cluster/charmdebug/Manifest | 2 +- ...bug-6.2.0.ebuild => charmdebug-6.2.0-r1.ebuild} | 2 +- sys-cluster/hpx/Manifest | 1 + sys-cluster/hpx/files/hpx-0.9.5-install-path.patch | 39 +++ sys-cluster/hpx/hpx-0.9.5.ebuild | 1 + .../hpx/{hpx-0.9.5.ebuild => hpx-0.9.6.ebuild} | 1 + virtual/cblas/ChangeLog | 3 + virtual/cblas/cblas-2.0.ebuild | 2 +- virtual/cblas/metadata.xml | 4 +- x11-libs/agg/ChangeLog | 27 ++ x11-libs/agg/Manifest | 1 + x11-libs/agg/agg-2.5-r3.ebuild | 69 +++++ ...on-terminating-loop-conditions-when-len-1.patch | 81 ++++++ ...ion-by-aborting-if-the-co-ordinates-are-t.patch | 40 +++ ...ates-from-previous-vertex-if-last-command.patch | 30 ++ ...izer_outline_aa-ignore-close_polygon-when.patch | 138 +++++++++ .../files/2.5/0005-Remove-VC-6-workaround.patch | 52 ++++ ...-Implement-grain-merge-blending-mode-GIMP.patch | 85 ++++++ ...mplement-grain-extract-blending-mode-GIMP.patch | 85 ++++++ ...tiplication-and-division-operators-as-con.patch | 36 +++ ...0009-Add-a-static-identity-transformation.patch | 37 +++ .../2.5/0010-Add-renderer_scanline_aa_alpha.patch | 193 +++++++++++++ ...Avoid-division-by-zero-in-color-burn-mode.patch | 58 ++++ ...12-Avoid-pixel-artifacts-when-compositing.patch | 26 ++ ...conv-classes-to-allow-access-to-the-origi.patch | 93 ++++++ ...tial-zero-division-resulting-in-nan-in-ag.patch | 30 ++ ...t-value-in-the-gamma-table-is-always-zero.patch | 24 ++ x11-libs/agg/files/2.5/agg-2.4-depends.patch | 48 ++++ x11-libs/agg/files/2.5/agg-2.5-autotools.patch | 11 + x11-libs/agg/files/2.5/agg-2.5-pkgconfig.patch | 10 + x11-libs/agg/files/2.5/agg-2.5-sdl-automagic.patch | 26 ++ x11-libs/agg/files/2.5/agg-2.5-sdl-m4.patch | 186 ++++++++++++ x11-libs/agg/metadata.xml | 14 + 141 files changed, 2124 insertions(+), 1648 deletions(-)